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143 related items for PubMed ID: 1390653

  • 1.
    ; . PubMed ID:
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  • 2. Mechanisms of guanosine triphosphate hydrolysis by Ras and Ras-GAP proteins as rationalized by ab initio QM/MM simulations.
    Grigorenko BL, Nemukhin AV, Shadrina MS, Topol IA, Burt SK.
    Proteins; 2007 Feb 01; 66(2):456-66. PubMed ID: 17094109
    [Abstract] [Full Text] [Related]

  • 3. Mechanistic analysis of the observed linear free energy relationships in p21ras and related systems.
    Schweins T, Warshel A.
    Biochemistry; 1996 Nov 12; 35(45):14232-43. PubMed ID: 8916908
    [Abstract] [Full Text] [Related]

  • 4. QM/MM modeling the Ras-GAP catalyzed hydrolysis of guanosine triphosphate.
    Grigorenko BL, Nemukhin AV, Topol IA, Cachau RE, Burt SK.
    Proteins; 2005 Aug 15; 60(3):495-503. PubMed ID: 15906320
    [Abstract] [Full Text] [Related]

  • 5. How does GAP catalyze the GTPase reaction of Ras? A computer simulation study.
    Glennon TM, Villà J, Warshel A.
    Biochemistry; 2000 Aug 15; 39(32):9641-51. PubMed ID: 10933780
    [Abstract] [Full Text] [Related]

  • 6. Revisiting the structural flexibility of the complex p21(ras)-GTP: the catalytic conformation of the molecular switch II.
    Soares TA, Miller JH, Straatsma TP.
    Proteins; 2001 Dec 01; 45(4):297-312. PubMed ID: 11746677
    [Abstract] [Full Text] [Related]

  • 7. Substrate-assisted catalysis as a mechanism for GTP hydrolysis of p21ras and other GTP-binding proteins.
    Schweins T, Geyer M, Scheffzek K, Warshel A, Kalbitzer HR, Wittinghofer A.
    Nat Struct Biol; 1995 Jan 01; 2(1):36-44. PubMed ID: 7719852
    [Abstract] [Full Text] [Related]

  • 8. Linear free energy relationships in the intrinsic and GTPase activating protein-stimulated guanosine 5'-triphosphate hydrolysis of p21ras.
    Schweins T, Geyer M, Kalbitzer HR, Wittinghofer A, Warshel A.
    Biochemistry; 1996 Nov 12; 35(45):14225-31. PubMed ID: 8916907
    [Abstract] [Full Text] [Related]

  • 9. Quantitative Measurement of Intrinsic GTP Hydrolysis for Carcinogenic Glutamine 61 Mutants in H-Ras.
    Novelli ET, First JT, Webb LJ.
    Biochemistry; 2018 Nov 06; 57(44):6356-6366. PubMed ID: 30339365
    [Abstract] [Full Text] [Related]

  • 10. Diversity of mechanisms in Ras-GAP catalysis of guanosine triphosphate hydrolysis revealed by molecular modeling.
    Grigorenko BL, Kots ED, Nemukhin AV.
    Org Biomol Chem; 2019 May 15; 17(19):4879-4891. PubMed ID: 31041977
    [Abstract] [Full Text] [Related]

  • 11. The pre-hydrolysis state of p21(ras) in complex with GTP: new insights into the role of water molecules in the GTP hydrolysis reaction of ras-like proteins.
    Scheidig AJ, Burmester C, Goody RS.
    Structure; 1999 Nov 15; 7(11):1311-24. PubMed ID: 10574788
    [Abstract] [Full Text] [Related]

  • 12. Prediction of the GTPase activities by using the semiempirical molecular orbital theory.
    Kinoshita H, Shimizu K.
    Bioorg Med Chem Lett; 1998 May 05; 8(9):1083-8. PubMed ID: 9871712
    [Abstract] [Full Text] [Related]

  • 13. The role of the metal ion in the p21ras catalysed GTP-hydrolysis: Mn2+ versus Mg2+.
    Schweins T, Scheffzek K, Assheuer R, Wittinghofer A.
    J Mol Biol; 1997 Mar 07; 266(4):847-56. PubMed ID: 9102473
    [Abstract] [Full Text] [Related]

  • 14. Role of glutamine-61 in the hydrolysis of GTP by p21H-ras: an experimental and theoretical study.
    Frech M, Darden TA, Pedersen LG, Foley CK, Charifson PS, Anderson MW, Wittinghofer A.
    Biochemistry; 1994 Mar 22; 33(11):3237-44. PubMed ID: 8136358
    [Abstract] [Full Text] [Related]

  • 15. Refined crystal structure of the triphosphate conformation of H-ras p21 at 1.35 A resolution: implications for the mechanism of GTP hydrolysis.
    Pai EF, Krengel U, Petsko GA, Goody RS, Kabsch W, Wittinghofer A.
    EMBO J; 1990 Aug 22; 9(8):2351-9. PubMed ID: 2196171
    [Abstract] [Full Text] [Related]

  • 16. Ab initio study of the role of lysine 16 for the molecular switching mechanism of Ras protein p21.
    Futatsugi N, Hata M, Hoshino T, Tsuda M.
    Biophys J; 1999 Dec 22; 77(6):3287-92. PubMed ID: 10585950
    [Abstract] [Full Text] [Related]

  • 17. X-ray crystal structures of transforming p21 ras mutants suggest a transition-state stabilization mechanism for GTP hydrolysis.
    Privé GG, Milburn MV, Tong L, de Vos AM, Yamaizumi Z, Nishimura S, Kim SH.
    Proc Natl Acad Sci U S A; 1992 Apr 15; 89(8):3649-53. PubMed ID: 1565661
    [Abstract] [Full Text] [Related]

  • 18. Ras-catalyzed hydrolysis of GTP: a new perspective from model studies.
    Maegley KA, Admiraal SJ, Herschlag D.
    Proc Natl Acad Sci U S A; 1996 Aug 06; 93(16):8160-6. PubMed ID: 8710841
    [Abstract] [Full Text] [Related]

  • 19. Hybrid QM/MM vs Pure MM Molecular Dynamics for Evaluating Water Distribution within p21N-ras and the Resulting GTP Electronic Density.
    Tichauer RH, Favre G, Cabantous S, Brut M.
    J Phys Chem B; 2019 May 09; 123(18):3935-3944. PubMed ID: 30991803
    [Abstract] [Full Text] [Related]

  • 20. Why does mutation of Gln61 in Ras by the nitro analog NGln maintain activity of Ras-GAP in hydrolysis of guanosine triphosphate?
    Khrenova MG, Grigorenko BL, Mironov VA, Nemukhin AV.
    Proteins; 2015 Nov 09; 83(11):2091-9. PubMed ID: 26370130
    [Abstract] [Full Text] [Related]

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