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334 related items for PubMed ID: 1391634

  • 1. Studies of DNA dumbbells. I. Melting curves of 17 DNA dumbbells with different duplex stem sequences linked by T4 endloops: evaluation of the nearest-neighbor stacking interactions in DNA.
    Doktycz MJ, Goldstein RF, Paner TM, Gallo FJ, Benight AS.
    Biopolymers; 1992 Jul; 32(7):849-64. PubMed ID: 1391634
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  • 2. Studies of DNA dumbbells. III. Theoretical analysis of optical melting curves of dumbbells with a 16 base-pair duplex stem and Tn end loops (n = 2, 3, 4, 6, 8, 10, 14).
    Paner TM, Amaratunga M, Benight AS.
    Biopolymers; 1992 Jul; 32(7):881-92. PubMed ID: 1391636
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  • 4. Studies of DNA dumbbells. II. Construction and characterization of DNA dumbbells with a 16 base-pair duplex stem and Tn end loops (n = 2, 3, 4, 6, 8, 10, 14).
    Amaratunga M, Snowden-Ifft E, Wemmer DE, Benight AS.
    Biopolymers; 1992 Jul; 32(7):865-79. PubMed ID: 1391635
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  • 5. Studies of DNA dumbbells VII: evaluation of the next-nearest-neighbor sequence-dependent interactions in duplex DNA.
    Owczarzy R, Vallone PM, Goldstein RF, Benight AS.
    Biopolymers; 1999 Jul; 52(1):29-56. PubMed ID: 10737861
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  • 6. Studies of DNA dumbbells VIII. Melting analysis of DNA dumbbells with dinucleotide repeat stem sequences.
    Mandell KE, Vallone PM, Owczarzy R, Riccelli PV, Benight AS.
    Biopolymers; 2006 Jun 15; 82(3):199-221. PubMed ID: 16345003
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  • 7. Sequence dependence of the free energy of B-Z junction formation in deoxyoligonucleotides.
    Sheardy RD, Suh D, Kurzinsky R, Doktycz MJ, Benight AS, Chaires JB.
    J Mol Biol; 1993 May 20; 231(2):475-88. PubMed ID: 8510158
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  • 8. Thermodynamic stability of the 5' dangling-ended DNA hairpins formed from sequences 5'-(XY)2GGATAC(T)4GTATCC-3', where X, Y = A, T, G, C.
    Doktycz MJ, Paner TM, Amaratunga M, Benight AS.
    Biopolymers; 1990 May 20; 30(7-8):829-45. PubMed ID: 2275982
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  • 9. Melting studies of short DNA hairpins: influence of loop sequence and adjoining base pair identity on hairpin thermodynamic stability.
    Vallone PM, Paner TM, Hilario J, Lane MJ, Faldasz BD, Benight AS.
    Biopolymers; 1999 Oct 05; 50(4):425-42. PubMed ID: 10423551
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  • 11. Effect of base pair A/C and G/T mismatches on the thermal stabilities of DNA oligomers that form B-Z junctions.
    Otokiti EO, Sheardy RD.
    Biochemistry; 1997 Sep 23; 36(38):11419-27. PubMed ID: 9298961
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  • 12. DNA oligonucleotide duplexes containing intramolecular platinated cross-links: energetics, hydration, sequence, and ionic effects.
    Kankia BI, Soto AM, Burns N, Shikiya R, Tung CS, Marky LA.
    Biopolymers; 2002 Nov 05; 65(3):218-27. PubMed ID: 12228927
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  • 13. Studies of DNA dumbbells. VI. Analysis of optical melting curves of dumbbells with a sixteen-base pair duplex stem and end-loops of variable size and sequence.
    Paner TM, Riccelli PV, Owczarzy R, Benight AS.
    Biopolymers; 1996 Dec 05; 39(6):779-93. PubMed ID: 8946800
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  • 16. A single 2'-hydroxyl group converts B-DNA to A-DNA. Crystal structure of the DNA-RNA chimeric decamer duplex d(CCGGC)r(G)d(CCGG) with a novel intermolecular G-C base-paired quadruplet.
    Ban C, Ramakrishnan B, Sundaralingam M.
    J Mol Biol; 1994 Feb 11; 236(1):275-85. PubMed ID: 7508984
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  • 17. Correcting for heat capacity and 5'-TA type terminal nearest neighbors improves prediction of DNA melting temperatures using nearest-neighbor thermodynamic models.
    Hughesman CB, Turner RF, Haynes C.
    Biochemistry; 2011 Apr 05; 50(13):2642-9. PubMed ID: 21323352
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  • 18. Contribution of loops and nicks to the formation of DNA dumbbells: melting behavior and ligand binding.
    Rentzeperis D, Ho J, Marky LA.
    Biochemistry; 1993 Mar 16; 32(10):2564-72. PubMed ID: 8448114
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  • 19. Thermodynamics of RNA duplexes with tandem mismatches containing a uracil-uracil pair flanked by C.G/G.C or G.C/A.U closing base pairs.
    Bourdélat-Parks BN, Wartell RM.
    Biochemistry; 2005 Dec 20; 44(50):16710-7. PubMed ID: 16342961
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  • 20. Influence of sequence context and length on the structure and stability of triplet repeat DNA oligomers.
    Paiva AM, Sheardy RD.
    Biochemistry; 2004 Nov 09; 43(44):14218-27. PubMed ID: 15518572
    [Abstract] [Full Text] [Related]

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