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Journal Abstract Search

2246 related items for PubMed ID: 1438297

  • 1. Amino acid substitution matrices from protein blocks.
    Henikoff S, Henikoff JG.
    Proc Natl Acad Sci U S A; 1992 Nov 15; 89(22):10915-9. PubMed ID: 1438297
    [Abstract] [Full Text] [Related]

  • 2. Robust sequence alignment using evolutionary rates coupled with an amino acid substitution matrix.
    Ndhlovu A, Hazelhurst S, Durand PM.
    BMC Bioinformatics; 2015 Aug 14; 16():255. PubMed ID: 26269100
    [Abstract] [Full Text] [Related]

  • 3. Optimizing substitution matrices by separating score distributions.
    Hourai Y, Akutsu T, Akiyama Y.
    Bioinformatics; 2004 Apr 12; 20(6):863-73. PubMed ID: 14752003
    [Abstract] [Full Text] [Related]

  • 4. Substitution matrices of residue triplets derived from protein blocks.
    Liu X, Zhao YP.
    J Comput Biol; 2010 Dec 12; 17(12):1679-87. PubMed ID: 21128854
    [Abstract] [Full Text] [Related]

  • 5. PFASUM: a substitution matrix from Pfam structural alignments.
    Keul F, Hess M, Goesele M, Hamacher K.
    BMC Bioinformatics; 2017 Jun 05; 18(1):293. PubMed ID: 28583067
    [Abstract] [Full Text] [Related]

  • 6. Amino acid substitution matrices from an information theoretic perspective.
    Altschul SF.
    J Mol Biol; 1991 Jun 05; 219(3):555-65. PubMed ID: 2051488
    [Abstract] [Full Text] [Related]

  • 7. A transition probability model for amino acid substitutions from blocks.
    Veerassamy S, Smith A, Tillier ER.
    J Comput Biol; 2003 Jun 05; 10(6):997-1010. PubMed ID: 14980022
    [Abstract] [Full Text] [Related]

  • 8. Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions.
    Huang YM, Bystroff C.
    Bioinformatics; 2006 Feb 15; 22(4):413-22. PubMed ID: 16352653
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  • 11. Performance evaluation of amino acid substitution matrices.
    Henikoff S, Henikoff JG.
    Proteins; 1993 Sep 15; 17(1):49-61. PubMed ID: 8234244
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  • 13. Protein database searches using compositionally adjusted substitution matrices.
    Altschul SF, Wootton JC, Gertz EM, Agarwala R, Morgulis A, Schäffer AA, Yu YK.
    FEBS J; 2005 Oct 15; 272(20):5101-9. PubMed ID: 16218944
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  • 15. Scoredist: a simple and robust protein sequence distance estimator.
    Sonnhammer EL, Hollich V.
    BMC Bioinformatics; 2005 Apr 27; 6():108. PubMed ID: 15857510
    [Abstract] [Full Text] [Related]

  • 16. Testing homology with Contact Accepted mutatiOn (CAO): a contact-based Markov model of protein evolution.
    Lin K, Kleinjung J, Taylor WR, Heringa J.
    Comput Biol Chem; 2003 May 27; 27(2):93-102. PubMed ID: 12821306
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  • 18. Amino acid similarity matrix for homology modeling derived from structural alignment and optimized by the Monte Carlo method.
    Ogata K, Ohya M, Umeyama H.
    J Mol Graph Model; 1998 May 27; 16(4-6):178-89, 254. PubMed ID: 10522237
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  • 20. Sequence alignment with an appropriate substitution matrix.
    Huang X.
    J Comput Biol; 2008 Mar 27; 15(2):129-38. PubMed ID: 18312146
    [Abstract] [Full Text] [Related]

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