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Journal Abstract Search

1144 related items for PubMed ID: 14517967

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  • 3. Free energy surfaces of beta-hairpin and alpha-helical peptides generated by replica exchange molecular dynamics with the AGBNP implicit solvent model.
    Felts AK, Harano Y, Gallicchio E, Levy RM.
    Proteins; 2004 Aug 01; 56(2):310-21. PubMed ID: 15211514
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  • 4. Comparative study of generalized born models: Born radii and peptide folding.
    Zhu J, Alexov E, Honig B.
    J Phys Chem B; 2005 Feb 24; 109(7):3008-22. PubMed ID: 16851315
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  • 5. A test of implicit solvent models on the folding simulation of the GB1 peptide.
    Shao Q, Yang L, Gao YQ.
    J Chem Phys; 2009 May 21; 130(19):195104. PubMed ID: 19466868
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  • 6. Exploring the protein folding free energy landscape: coupling replica exchange method with P3ME/RESPA algorithm.
    Zhou R.
    J Mol Graph Model; 2004 May 21; 22(5):451-63. PubMed ID: 15099840
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  • 10. Modeling loop reorganization free energies of acetylcholinesterase: a comparison of explicit and implicit solvent models.
    Olson MA.
    Proteins; 2004 Dec 01; 57(4):645-50. PubMed ID: 15481087
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  • 14. Quantitative analysis of Poisson-Boltzmann implicit solvent in molecular dynamics.
    Wang J, Tan C, Chanco E, Luo R.
    Phys Chem Chem Phys; 2010 Feb 07; 12(5):1194-202. PubMed ID: 20094685
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  • 16. Discrimination between native and intentionally misfolded conformations of proteins: ES/IS, a new method for calculating conformational free energy that uses both dynamics simulations with an explicit solvent and an implicit solvent continuum model.
    Vorobjev YN, Almagro JC, Hermans J.
    Proteins; 1998 Sep 01; 32(4):399-413. PubMed ID: 9726412
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  • 17. Polyproline II helix is the preferred conformation for unfolded polyalanine in water.
    Mezei M, Fleming PJ, Srinivasan R, Rose GD.
    Proteins; 2004 May 15; 55(3):502-7. PubMed ID: 15103614
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  • 18. Anti-cooperativity and cooperativity in hydrophobic interactions: Three-body free energy landscapes and comparison with implicit-solvent potential functions for proteins.
    Shimizu S, Chan HS.
    Proteins; 2002 Jul 01; 48(1):15-30. PubMed ID: 12012334
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  • 19. Refinement of NMR structures using implicit solvent and advanced sampling techniques.
    Chen J, Im W, Brooks CL.
    J Am Chem Soc; 2004 Dec 15; 126(49):16038-47. PubMed ID: 15584737
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