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Journal Abstract Search

1857 related items for PubMed ID: 14552658

  • 1. OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
    Raghava GP, Searle SM, Audley PC, Barber JD, Barton GJ.
    BMC Bioinformatics; 2003 Oct 10; 4():47. PubMed ID: 14552658
    [Abstract] [Full Text] [Related]

  • 2. BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark.
    Thompson JD, Koehl P, Ripp R, Poch O.
    Proteins; 2005 Oct 01; 61(1):127-36. PubMed ID: 16044462
    [Abstract] [Full Text] [Related]

  • 3. DIALIGN-T: an improved algorithm for segment-based multiple sequence alignment.
    Subramanian AR, Weyer-Menkhoff J, Kaufmann M, Morgenstern B.
    BMC Bioinformatics; 2005 Mar 22; 6():66. PubMed ID: 15784139
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  • 4. Multiple sequence alignment.
    Edgar RC, Batzoglou S.
    Curr Opin Struct Biol; 2006 Jun 22; 16(3):368-73. PubMed ID: 16679011
    [Abstract] [Full Text] [Related]

  • 5. T-Coffee: A novel method for fast and accurate multiple sequence alignment.
    Notredame C, Higgins DG, Heringa J.
    J Mol Biol; 2000 Sep 08; 302(1):205-17. PubMed ID: 10964570
    [Abstract] [Full Text] [Related]

  • 6. Improvement of alignment accuracy utilizing sequentially conserved motifs.
    Chakrabarti S, Bhardwaj N, Anand PA, Sowdhamini R.
    BMC Bioinformatics; 2004 Oct 28; 5():167. PubMed ID: 15509307
    [Abstract] [Full Text] [Related]

  • 7. APDB: a web server to evaluate the accuracy of sequence alignments using structural information.
    Armougom F, Poirot O, Moretti S, Higgins DG, Bucher P, Keduas V, Notredame C.
    Bioinformatics; 2006 Oct 01; 22(19):2439-40. PubMed ID: 17032685
    [Abstract] [Full Text] [Related]

  • 8. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
    Bininda-Emonds OR.
    BMC Bioinformatics; 2005 Jun 22; 6():156. PubMed ID: 15969769
    [Abstract] [Full Text] [Related]

  • 9. Structure-based evaluation of sequence comparison and fold recognition alignment accuracy.
    Domingues FS, Lackner P, Andreeva A, Sippl MJ.
    J Mol Biol; 2000 Apr 07; 297(4):1003-13. PubMed ID: 10736233
    [Abstract] [Full Text] [Related]

  • 10. PASS2: an automated database of protein alignments organised as structural superfamilies.
    Bhaduri A, Pugalenthi G, Sowdhamini R.
    BMC Bioinformatics; 2004 Apr 02; 5():35. PubMed ID: 15059245
    [Abstract] [Full Text] [Related]

  • 11. Improvement in the accuracy of multiple sequence alignment program MAFFT.
    Katoh K, Kuma K, Miyata T, Toh H.
    Genome Inform; 2005 Apr 02; 16(1):22-33. PubMed ID: 16362903
    [Abstract] [Full Text] [Related]

  • 12. An adaptive and iterative algorithm for refining multiple sequence alignment.
    Wang Y, Li KB.
    Comput Biol Chem; 2004 Apr 02; 28(2):141-8. PubMed ID: 15130542
    [Abstract] [Full Text] [Related]

  • 13. Periodic distributions of hydrophobic amino acids allows the definition of fundamental building blocks to align distantly related proteins.
    Baussand J, Deremble C, Carbone A.
    Proteins; 2007 May 15; 67(3):695-708. PubMed ID: 17299747
    [Abstract] [Full Text] [Related]

  • 14. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
    Yang AS, Honig B.
    J Mol Biol; 2000 Aug 18; 301(3):691-711. PubMed ID: 10966778
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  • 20. The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods.
    Moretti S, Armougom F, Wallace IM, Higgins DG, Jongeneel CV, Notredame C.
    Nucleic Acids Res; 2007 Jul 18; 35(Web Server issue):W645-8. PubMed ID: 17526519
    [Abstract] [Full Text] [Related]

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