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Journal Abstract Search

107 related items for PubMed ID: 14579313

  • 21.
    ; . PubMed ID:
    [No Abstract] [Full Text] [Related]

  • 22. Specificity in protein-DNA interactions: energetic recognition by the (cytosine-C5)-methyltransferase from HhaI.
    Huang N, MacKerell AD.
    J Mol Biol; 2005 Jan 14; 345(2):265-74. PubMed ID: 15571720
    [Abstract] [Full Text] [Related]

  • 23.
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    [No Abstract] [Full Text] [Related]

  • 24. Nature of base stacking: reference quantum-chemical stacking energies in ten unique B-DNA base-pair steps.
    Sponer J, Jurecka P, Marchan I, Luque FJ, Orozco M, Hobza P.
    Chemistry; 2006 Mar 20; 12(10):2854-65. PubMed ID: 16425171
    [Abstract] [Full Text] [Related]

  • 25. Thermodynamics of b-HLH-LZ protein binding to DNA: the energetic importance of protein-DNA contacts in site-specific E-box recognition by the complete gene product of the Max p21 transcription factor.
    Meier-Andrejszki L, Bjelić S, Naud JF, Lavigne P, Jelesarov I.
    Biochemistry; 2007 Oct 30; 46(43):12427-40. PubMed ID: 17915948
    [Abstract] [Full Text] [Related]

  • 26. Arc repressor-operator DNA interactions and contribution of Phe10 to binding specificity.
    Dostál L, Misselwitz R, Welfle H.
    Biochemistry; 2005 Jun 14; 44(23):8387-96. PubMed ID: 15938628
    [Abstract] [Full Text] [Related]

  • 27. Forces driving the binding of homeodomains to DNA.
    Dragan AI, Li Z, Makeyeva EN, Milgotina EI, Liu Y, Crane-Robinson C, Privalov PL.
    Biochemistry; 2006 Jan 10; 45(1):141-51. PubMed ID: 16388589
    [Abstract] [Full Text] [Related]

  • 28. P22 c2 repressor-operator complex: mechanisms of direct and indirect readout.
    Watkins D, Hsiao C, Woods KK, Koudelka GB, Williams LD.
    Biochemistry; 2008 Feb 26; 47(8):2325-38. PubMed ID: 18237194
    [Abstract] [Full Text] [Related]

  • 29. Heat capacity effects of water molecules and ions at a protein-DNA interface.
    Bergqvist S, Williams MA, O'Brien R, Ladbury JE.
    J Mol Biol; 2004 Feb 27; 336(4):829-42. PubMed ID: 15095863
    [Abstract] [Full Text] [Related]

  • 30. Thermochemistry of protein-DNA interaction studied with temperature-controlled nonequilibrium capillary electrophoresis of equilibrium mixtures.
    Berezovski M, Krylov SN.
    Anal Chem; 2005 Mar 01; 77(5):1526-9. PubMed ID: 15732940
    [Abstract] [Full Text] [Related]

  • 31. Structure-based stability analysis of an extremely stable dimeric DNA binding protein from Sulfolobus islandicus.
    Weininger U, Zeeb M, Neumann P, Löw C, Stubbs MT, Lipps G, Balbach J.
    Biochemistry; 2009 Oct 27; 48(42):10030-7. PubMed ID: 19788170
    [Abstract] [Full Text] [Related]

  • 32. Non-cognate enzyme-DNA complex: structural and kinetic analysis of EcoRV endonuclease bound to the EcoRI recognition site GAATTC.
    Hiller DA, Rodriguez AM, Perona JJ.
    J Mol Biol; 2005 Nov 18; 354(1):121-36. PubMed ID: 16236314
    [Abstract] [Full Text] [Related]

  • 33. Picture story. Rules for protein-DNA interactions.
    Konforti B.
    Nat Struct Biol; 1999 Jun 18; 6(6):505. PubMed ID: 10360347
    [No Abstract] [Full Text] [Related]

  • 34. Calculation of ligand-nucleic acid binding free energies with the generalized-born model in DOCK.
    Kang X, Shafer RH, Kuntz ID.
    Biopolymers; 2004 Feb 05; 73(2):192-204. PubMed ID: 14755577
    [Abstract] [Full Text] [Related]

  • 35. The role of DNA deformation energy at individual base steps for the identification of DNA-protein binding sites.
    Steffen NR, Murphy SD, Lathrop RH, Opel ML, Tolleri L, Hatfield GW.
    Genome Inform; 2002 Feb 05; 13():153-62. PubMed ID: 14571384
    [Abstract] [Full Text] [Related]

  • 36. Sequence-specific transitions of the torsion angle gamma change the polar-hydrophobic profile of the DNA grooves: implication for indirect protein-DNA recognition.
    Zhitnikova MY, Boryskina OP, Shestopalova AV.
    J Biomol Struct Dyn; 2014 Feb 05; 32(10):1670-85. PubMed ID: 23998351
    [Abstract] [Full Text] [Related]

  • 37. Recognizing DNA.
    Lavery R.
    Q Rev Biophys; 2005 Nov 05; 38(4):339-44. PubMed ID: 16515738
    [Abstract] [Full Text] [Related]

  • 38. Prediction of atomic structure from sequence for double helical DNA oligomers.
    Farwer J, Packer MJ, Hunter CA.
    Biopolymers; 2006 Jan 05; 81(1):51-61. PubMed ID: 16184626
    [Abstract] [Full Text] [Related]

  • 39. Crystal structure of the human LRH-1 DBD-DNA complex reveals Ftz-F1 domain positioning is required for receptor activity.
    Solomon IH, Hager JM, Safi R, McDonnell DP, Redinbo MR, Ortlund EA.
    J Mol Biol; 2005 Dec 16; 354(5):1091-102. PubMed ID: 16289203
    [Abstract] [Full Text] [Related]

  • 40. The relative flexibility of B-DNA and A-RNA duplexes: database analysis.
    Pérez A, Noy A, Lankas F, Luque FJ, Orozco M.
    Nucleic Acids Res; 2004 Dec 16; 32(20):6144-51. PubMed ID: 15562006
    [Abstract] [Full Text] [Related]

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