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Journal Abstract Search

177 related items for PubMed ID: 14624550

  • 1. Fast protein structure prediction using Monte Carlo simulations with modal moves.
    Carnevali P, Tóth G, Toubassi G, Meshkat SN.
    J Am Chem Soc; 2003 Nov 26; 125(47):14244-5. PubMed ID: 14624550
    [Abstract] [Full Text] [Related]

  • 2. Biopolymer structure simulation and optimization via fragment regrowth Monte Carlo.
    Zhang J, Kou SC, Liu JS.
    J Chem Phys; 2007 Jun 14; 126(22):225101. PubMed ID: 17581081
    [Abstract] [Full Text] [Related]

  • 3. Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins.
    Abagyan R, Totrov M.
    J Mol Biol; 1994 Jan 21; 235(3):983-1002. PubMed ID: 8289329
    [Abstract] [Full Text] [Related]

  • 4. Monte Carlo vs molecular dynamics for all-atom polypeptide folding simulations.
    Ulmschneider JP, Ulmschneider MB, Di Nola A.
    J Phys Chem B; 2006 Aug 24; 110(33):16733-42. PubMed ID: 16913813
    [Abstract] [Full Text] [Related]

  • 5. Folding of small proteins by Monte Carlo simulations with chemical shift restraints without the use of molecular fragment replacement or structural homology.
    Robustelli P, Cavalli A, Dobson CM, Vendruscolo M, Salvatella X.
    J Phys Chem B; 2009 Jun 04; 113(22):7890-6. PubMed ID: 19425536
    [Abstract] [Full Text] [Related]

  • 6. Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.
    Kolinski A, Skolnick J.
    Proteins; 1994 Apr 04; 18(4):338-52. PubMed ID: 8208726
    [Abstract] [Full Text] [Related]

  • 7. Characterization of protein-folding pathways by reduced-space modeling.
    Kmiecik S, Kolinski A.
    Proc Natl Acad Sci U S A; 2007 Jul 24; 104(30):12330-5. PubMed ID: 17636132
    [Abstract] [Full Text] [Related]

  • 8. Overcoming entropic barrier with coupled sampling at dual resolutions.
    Lwin TZ, Luo R.
    J Chem Phys; 2005 Nov 15; 123(19):194904. PubMed ID: 16321110
    [Abstract] [Full Text] [Related]

  • 9. Sampling efficiency in explicit and implicit membrane environments studied by peptide folding simulations.
    Ulmschneider JP, Ulmschneider MB.
    Proteins; 2009 May 15; 75(3):586-97. PubMed ID: 19003985
    [Abstract] [Full Text] [Related]

  • 10. Assembly of protein structure from sparse experimental data: an efficient Monte Carlo model.
    Kolinski A, Skolnick J.
    Proteins; 1998 Sep 01; 32(4):475-94. PubMed ID: 9726417
    [Abstract] [Full Text] [Related]

  • 11. Reproducible polypeptide folding and structure prediction using molecular dynamics simulations.
    Seibert MM, Patriksson A, Hess B, van der Spoel D.
    J Mol Biol; 2005 Nov 18; 354(1):173-83. PubMed ID: 16236315
    [Abstract] [Full Text] [Related]

  • 12. Fold assembly of small proteins using monte carlo simulations driven by restraints derived from multiple sequence alignments.
    Ortiz AR, Kolinski A, Skolnick J.
    J Mol Biol; 1998 Mar 27; 277(2):419-48. PubMed ID: 9514747
    [Abstract] [Full Text] [Related]

  • 13. Efficient Monte Carlo trial moves for polypeptide simulations.
    Betancourt MR.
    J Chem Phys; 2005 Nov 01; 123(17):174905. PubMed ID: 16375567
    [Abstract] [Full Text] [Related]

  • 14. Biased fragment distribution in MC simulation of protein folding.
    Martineau E, L'Heureux PJ, Gunn JR.
    J Comput Chem; 2004 Nov 30; 25(15):1895-903. PubMed ID: 15378533
    [Abstract] [Full Text] [Related]

  • 15. Ab initio prediction of protein structure using LINUS.
    Srinivasan R, Rose GD.
    Proteins; 2002 Jun 01; 47(4):489-95. PubMed ID: 12001227
    [Abstract] [Full Text] [Related]

  • 16. Monte Carlo folding of trans-membrane helical peptides in an implicit generalized Born membrane.
    Ulmschneider JP, Ulmschneider MB, Di Nola A.
    Proteins; 2007 Nov 01; 69(2):297-308. PubMed ID: 17600830
    [Abstract] [Full Text] [Related]

  • 17. Folding simulations of small proteins.
    Kim SY, Lee J, Lee J.
    Biophys Chem; 2005 Apr 01; 115(2-3):195-200. PubMed ID: 15752604
    [Abstract] [Full Text] [Related]

  • 18. Ab initio computational modeling of loops in G-protein-coupled receptors: lessons from the crystal structure of rhodopsin.
    Mehler EL, Hassan SA, Kortagere S, Weinstein H.
    Proteins; 2006 Aug 15; 64(3):673-90. PubMed ID: 16729264
    [Abstract] [Full Text] [Related]

  • 19. Ab initio folding simulation of Trpcage by replica exchange with hybrid Hamiltonian.
    Xu W, Mu Y.
    Biophys Chem; 2008 Oct 15; 137(2-3):116-25. PubMed ID: 18775599
    [Abstract] [Full Text] [Related]

  • 20. Polypeptide folding using Monte Carlo sampling, concerted rotation, and continuum solvation.
    Ulmschneider JP, Jorgensen WL.
    J Am Chem Soc; 2004 Feb 18; 126(6):1849-57. PubMed ID: 14871118
    [Abstract] [Full Text] [Related]

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