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381 related items for PubMed ID: 14640661
1. Ab initio folding of helix bundle proteins using molecular dynamics simulations. Jang S, Kim E, Shin S, Pak Y. J Am Chem Soc; 2003 Dec 03; 125(48):14841-6. PubMed ID: 14640661 [Abstract] [Full Text] [Related]
2. Enhanced ab initio protein folding simulations in Poisson-Boltzmann molecular dynamics with self-guiding forces. Wen EZ, Hsieh MJ, Kollman PA, Luo R. J Mol Graph Model; 2004 May 03; 22(5):415-24. PubMed ID: 15099837 [Abstract] [Full Text] [Related]
8. Folding of a model three-helix bundle protein: a thermodynamic and kinetic analysis. Zhou Y, Karplus M. J Mol Biol; 1999 Nov 05; 293(4):917-51. PubMed ID: 10543976 [Abstract] [Full Text] [Related]
10. Free energy landscape of protein folding in water: explicit vs. implicit solvent. Zhou R. Proteins; 2003 Nov 01; 53(2):148-61. PubMed ID: 14517967 [Abstract] [Full Text] [Related]
11. Denatured-state ensemble and the early-stage folding of the G29A mutant of the B-domain of protein A. Chowdhury S, Lei H, Duan Y. J Phys Chem B; 2005 May 12; 109(18):9073-81. PubMed ID: 16852080 [Abstract] [Full Text] [Related]
13. Characterization of the folding kinetics of a three-helix bundle protein via a minimalist Langevin model. Berriz GF, Shakhnovich EI. J Mol Biol; 2001 Jul 13; 310(3):673-85. PubMed ID: 11439031 [Abstract] [Full Text] [Related]
14. Influence of temperature, friction, and random forces on folding of the B-domain of staphylococcal protein A: all-atom molecular dynamics in implicit solvent. Jagielska A, Scheraga HA. J Comput Chem; 2007 Apr 30; 28(6):1068-82. PubMed ID: 17279497 [Abstract] [Full Text] [Related]
17. Transition state ensemble for the folding of B domain of protein A: a comparison of distributed molecular dynamics simulations with experiments. Cheng S, Yang Y, Wang W, Liu H. J Phys Chem B; 2005 Dec 15; 109(49):23645-54. PubMed ID: 16375343 [Abstract] [Full Text] [Related]
18. Direct folding simulation of alpha-helices and beta-hairpins based on a single all-atom force field with an implicit solvation model. Jang S, Kim E, Pak Y. Proteins; 2007 Jan 01; 66(1):53-60. PubMed ID: 17063490 [Abstract] [Full Text] [Related]
19. All-atom fast protein folding simulations: the villin headpiece. Shen MY, Freed KF. Proteins; 2002 Dec 01; 49(4):439-45. PubMed ID: 12402354 [Abstract] [Full Text] [Related]