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115 related items for PubMed ID: 14640686

  • 1. Thermodynamic stability and structural features of the J4/5 loop in a Pneumocystis carinii group I intron.
    Schroeder SJ, Fountain MA, Kennedy SD, Lukavsky PJ, Puglisi JD, Krugh TR, Turner DH.
    Biochemistry; 2003 Dec 09; 42(48):14184-96. PubMed ID: 14640686
    [Abstract] [Full Text] [Related]

  • 2. Structural features and thermodynamics of the J4/5 loop from the Candida albicans and Candida dubliniensis group I introns.
    Znosko BM, Kennedy SD, Wille PC, Krugh TR, Turner DH.
    Biochemistry; 2004 Dec 21; 43(50):15822-37. PubMed ID: 15595837
    [Abstract] [Full Text] [Related]

  • 3. Antisense binding enhanced by tertiary interactions: binding of phosphorothioate and N3'-->P5' phosphoramidate hexanucleotides to the catalytic core of a group I ribozyme from the mammalian pathogen Pneumocystis carinii.
    Testa SM, Gryaznov SM, Turner DH.
    Biochemistry; 1998 Jun 30; 37(26):9379-85. PubMed ID: 9649319
    [Abstract] [Full Text] [Related]

  • 4. A Pneumocystis carinii group I intron ribozyme that does not require 2' OH groups on its 5' exon mimic for binding to the catalytic core.
    Testa SM, Haidaris CG, Gigliotti F, Turner DH.
    Biochemistry; 1997 Dec 09; 36(49):15303-14. PubMed ID: 9398259
    [Abstract] [Full Text] [Related]

  • 5. Differential helix stabilities and sites pre-organized for tertiary interactions revealed by monitoring local nucleotide flexibility in the bI5 group I intron RNA.
    Chamberlin SI, Weeks KM.
    Biochemistry; 2003 Feb 04; 42(4):901-9. PubMed ID: 12549908
    [Abstract] [Full Text] [Related]

  • 6. NMR structure and dynamics of an RNA motif common to the spliceosome branch-point helix and the RNA-binding site for phage GA coat protein.
    Smith JS, Nikonowicz EP.
    Biochemistry; 1998 Sep 29; 37(39):13486-98. PubMed ID: 9753434
    [Abstract] [Full Text] [Related]

  • 7. Solution structure of an RNA internal loop with three consecutive sheared GA pairs.
    Chen G, Znosko BM, Kennedy SD, Krugh TR, Turner DH.
    Biochemistry; 2005 Mar 01; 44(8):2845-56. PubMed ID: 15723528
    [Abstract] [Full Text] [Related]

  • 8. Factors affecting thermodynamic stabilities of RNA 3 x 3 internal loops.
    Chen G, Znosko BM, Jiao X, Turner DH.
    Biochemistry; 2004 Oct 12; 43(40):12865-76. PubMed ID: 15461459
    [Abstract] [Full Text] [Related]

  • 9. Structure and thermodynamics of metal binding in the P5 helix of a group I intron ribozyme.
    Colmenarejo G, Tinoco I.
    J Mol Biol; 1999 Jul 02; 290(1):119-35. PubMed ID: 10388561
    [Abstract] [Full Text] [Related]

  • 10. Nuclear magnetic resonance structure of the Varkud satellite ribozyme stem-loop V RNA and magnesium-ion binding from chemical-shift mapping.
    Campbell DO, Legault P.
    Biochemistry; 2005 Mar 22; 44(11):4157-70. PubMed ID: 15766243
    [Abstract] [Full Text] [Related]

  • 11. Sequence dependence of the stability of RNA hairpin molecules with six nucleotide loops.
    Vecenie CJ, Morrow CV, Zyra A, Serra MJ.
    Biochemistry; 2006 Feb 07; 45(5):1400-7. PubMed ID: 16445282
    [Abstract] [Full Text] [Related]

  • 12. Thermodynamic stabilities of internal loops with GU closing pairs in RNA.
    Schroeder SJ, Turner DH.
    Biochemistry; 2001 Sep 25; 40(38):11509-17. PubMed ID: 11560499
    [Abstract] [Full Text] [Related]

  • 13. 5' transcript replacement in vitro catalyzed by a group I intron-derived ribozyme.
    Alexander RC, Baum DA, Testa SM.
    Biochemistry; 2005 May 31; 44(21):7796-804. PubMed ID: 15909994
    [Abstract] [Full Text] [Related]

  • 14. A Pneumocystis carinii group I intron-derived ribozyme utilizes an endogenous guanosine as the first reaction step nucleophile in the trans excision-splicing reaction.
    Dotson PP, Sinha J, Testa SM.
    Biochemistry; 2008 Apr 22; 47(16):4780-7. PubMed ID: 18363339
    [Abstract] [Full Text] [Related]

  • 15. Factors affecting the thermodynamic stability of small asymmetric internal loops in RNA.
    Schroeder SJ, Turner DH.
    Biochemistry; 2000 Aug 08; 39(31):9257-74. PubMed ID: 10924119
    [Abstract] [Full Text] [Related]

  • 16. Conformation of the Group II intron branch site in solution.
    Schlatterer JC, Crayton SH, Greenbaum NL.
    J Am Chem Soc; 2006 Mar 29; 128(12):3866-7. PubMed ID: 16551067
    [Abstract] [Full Text] [Related]

  • 17. Metal ion stabilization of the U-turn of the A37 N6-dimethylallyl-modified anticodon stem-loop of Escherichia coli tRNAPhe.
    Cabello-Villegas J, Tworowska I, Nikonowicz EP.
    Biochemistry; 2004 Jan 13; 43(1):55-66. PubMed ID: 14705931
    [Abstract] [Full Text] [Related]

  • 18. New approaches to targeting RNA with oligonucleotides: inhibition of group I intron self-splicing.
    Disney MD, Childs JL, Turner DH.
    Biopolymers; 2004 Jan 13; 73(1):151-61. PubMed ID: 14691946
    [Abstract] [Full Text] [Related]

  • 19. Internal bulge and tetraloop of the catalytic domain 5 of a group II intron ribozyme are flexible: implications for catalysis.
    Eldho NV, Dayie KT.
    J Mol Biol; 2007 Jan 26; 365(4):930-44. PubMed ID: 17098254
    [Abstract] [Full Text] [Related]

  • 20. NMR structures of loop B RNAs from the stem-loop IV domain of the enterovirus internal ribosome entry site: a single C to U substitution drastically changes the shape and flexibility of RNA.
    Du Z, Ulyanov NB, Yu J, Andino R, James TL.
    Biochemistry; 2004 May 18; 43(19):5757-71. PubMed ID: 15134450
    [Abstract] [Full Text] [Related]

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