These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


Pubmed for Handhelds

PUBMED FOR HANDHELDS

Journal Abstract Search

195 related items for PubMed ID: 14642659

  • 21. A python-based docking program utilizing a receptor bound ligand shape: PythDock.
    Chung JY, Cho SJ, Hah JM.
    Arch Pharm Res; 2011 Sep; 34(9):1451-8. PubMed ID: 21975806
    [Abstract] [Full Text] [Related]

  • 22. A detailed comparison of current docking and scoring methods on systems of pharmaceutical relevance.
    Perola E, Walters WP, Charifson PS.
    Proteins; 2004 Aug 01; 56(2):235-49. PubMed ID: 15211508
    [Abstract] [Full Text] [Related]

  • 23. MEDock: a web server for efficient prediction of ligand binding sites based on a novel optimization algorithm.
    Chang DT, Oyang YJ, Lin JH.
    Nucleic Acids Res; 2005 Jul 01; 33(Web Server issue):W233-8. PubMed ID: 15991337
    [Abstract] [Full Text] [Related]

  • 24. MOLS 2.0: software package for peptide modeling and protein-ligand docking.
    Paul DS, Gautham N.
    J Mol Model; 2016 Oct 01; 22(10):239. PubMed ID: 27638416
    [Abstract] [Full Text] [Related]

  • 25. A scalable and accurate method for classifying protein-ligand binding geometries using a MapReduce approach.
    Estrada T, Zhang B, Cicotti P, Armen RS, Taufer M.
    Comput Biol Med; 2012 Jul 01; 42(7):758-71. PubMed ID: 22658682
    [Abstract] [Full Text] [Related]

  • 26. Docking into knowledge-based potential fields: a comparative evaluation of DrugScore.
    Sotriffer CA, Gohlke H, Klebe G.
    J Med Chem; 2002 May 09; 45(10):1967-70. PubMed ID: 11985464
    [Abstract] [Full Text] [Related]

  • 27. Using AutoDock for ligand-receptor docking.
    Morris GM, Huey R, Olson AJ.
    Curr Protoc Bioinformatics; 2008 Dec 09; Chapter 8():Unit 8.14. PubMed ID: 19085980
    [Abstract] [Full Text] [Related]

  • 28. Principles of docking: An overview of search algorithms and a guide to scoring functions.
    Halperin I, Ma B, Wolfson H, Nussinov R.
    Proteins; 2002 Jun 01; 47(4):409-43. PubMed ID: 12001221
    [Abstract] [Full Text] [Related]

  • 29. Insights into the Molecular Mechanisms of Protein-Ligand Interactions by Molecular Docking and Molecular Dynamics Simulation: A Case of Oligopeptide Binding Protein.
    Fu Y, Zhao J, Chen Z.
    Comput Math Methods Med; 2018 Jun 01; 2018():3502514. PubMed ID: 30627209
    [Abstract] [Full Text] [Related]

  • 30. Docking with AutoDock4.
    Bitencourt-Ferreira G, Pintro VO, de Azevedo WF.
    Methods Mol Biol; 2019 Jun 01; 2053():125-148. PubMed ID: 31452103
    [Abstract] [Full Text] [Related]

  • 31. FlexE: efficient molecular docking considering protein structure variations.
    Claussen H, Buning C, Rarey M, Lengauer T.
    J Mol Biol; 2001 Apr 27; 308(2):377-95. PubMed ID: 11327774
    [Abstract] [Full Text] [Related]

  • 32. Fully automated flexible docking of ligands into flexible synthetic receptors using forward and inverse docking strategies.
    Kämper A, Apostolakis J, Rarey M, Marian CM, Lengauer T.
    J Chem Inf Model; 2006 Apr 27; 46(2):903-11. PubMed ID: 16563022
    [Abstract] [Full Text] [Related]

  • 33. FIPSDock: a new molecular docking technique driven by fully informed swarm optimization algorithm.
    Liu Y, Zhao L, Li W, Zhao D, Song M, Yang Y.
    J Comput Chem; 2013 Jan 05; 34(1):67-75. PubMed ID: 22961860
    [Abstract] [Full Text] [Related]

  • 34. An Efficient ABC_DE_Based Hybrid Algorithm for Protein-Ligand Docking.
    Guan B, Zhang C, Zhao Y.
    Int J Mol Sci; 2018 Apr 13; 19(4):. PubMed ID: 29652791
    [Abstract] [Full Text] [Related]

  • 35. Structure-based drug design: docking and scoring.
    Kroemer RT.
    Curr Protein Pept Sci; 2007 Aug 13; 8(4):312-28. PubMed ID: 17696866
    [Abstract] [Full Text] [Related]

  • 36. Development and validation of a modular, extensible docking program: DOCK 5.
    Moustakas DT, Lang PT, Pegg S, Pettersen E, Kuntz ID, Brooijmans N, Rizzo RC.
    J Comput Aided Mol Des; 2006 Aug 13; 20(10-11):601-19. PubMed ID: 17149653
    [Abstract] [Full Text] [Related]

  • 37. Classification of protein complexes based on docking difficulty.
    Vajda S.
    Proteins; 2005 Aug 01; 60(2):176-80. PubMed ID: 15981248
    [Abstract] [Full Text] [Related]

  • 38. Molegro Virtual Docker for Docking.
    Bitencourt-Ferreira G, de Azevedo WF.
    Methods Mol Biol; 2019 Aug 01; 2053():149-167. PubMed ID: 31452104
    [Abstract] [Full Text] [Related]

  • 39. MSLDOCK: Multi-Swarm Optimization for Flexible Ligand Docking and Virtual Screening.
    Li C, Sun J, Palade V.
    J Chem Inf Model; 2021 Mar 22; 61(3):1500-1515. PubMed ID: 33657798
    [Abstract] [Full Text] [Related]

  • 40. Computational Graphics Software for Interactive Docking and Visualization of Ligand-Protein Complementarity.
    Baskaran SG, Sharp TP, Sharp KA.
    J Chem Inf Model; 2021 Mar 22; 61(3):1427-1443. PubMed ID: 33656873
    [Abstract] [Full Text] [Related]

    Page: [Previous] [Next] [New Search]
    of 10.