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148 related items for PubMed ID: 14692769

  • 1. Folding of a stable DNA motif involves a highly cooperative network of interactions.
    Moody EM, Bevilacqua PC.
    J Am Chem Soc; 2003 Dec 31; 125(52):16285-93. PubMed ID: 14692769
    [Abstract] [Full Text] [Related]

  • 2. Evidence that folding of an RNA tetraloop hairpin is less cooperative than its DNA counterpart.
    Moody EM, Feerrar JC, Bevilacqua PC.
    Biochemistry; 2004 Jun 29; 43(25):7992-8. PubMed ID: 15209494
    [Abstract] [Full Text] [Related]

  • 3. Thermodynamic coupling of the loop and stem in unusually stable DNA hairpins closed by CG base pairs.
    Moody EM, Bevilacqua PC.
    J Am Chem Soc; 2003 Feb 26; 125(8):2032-3. PubMed ID: 12590515
    [Abstract] [Full Text] [Related]

  • 4. A DNA hairpin with a single residue loop closed by a strongly distorted Watson-Crick G x C base-pair.
    El Amri C, Mauffret O, Monnot M, Tevanian G, Lescot E, Porumb H, Fermandjian S.
    J Mol Biol; 1999 Nov 26; 294(2):427-42. PubMed ID: 10610769
    [Abstract] [Full Text] [Related]

  • 5. Melting studies of short DNA hairpins: influence of loop sequence and adjoining base pair identity on hairpin thermodynamic stability.
    Vallone PM, Paner TM, Hilario J, Lane MJ, Faldasz BD, Benight AS.
    Biopolymers; 1999 Oct 05; 50(4):425-42. PubMed ID: 10423551
    [Abstract] [Full Text] [Related]

  • 6. Portability of the GN(R)A hairpin loop motif between RNA and DNA.
    Blose JM, Lloyd KP, Bevilacqua PC.
    Biochemistry; 2009 Sep 22; 48(37):8787-94. PubMed ID: 19681609
    [Abstract] [Full Text] [Related]

  • 7. A network of heterogeneous hydrogen bonds in GNRA tetraloops.
    Jucker FM, Heus HA, Yip PF, Moors EH, Pardi A.
    J Mol Biol; 1996 Dec 20; 264(5):968-80. PubMed ID: 9000624
    [Abstract] [Full Text] [Related]

  • 8. A novel RNA motif based on the structure of unusually stable 2',5'-linked r(UUCG) loops.
    Denisov AY, Hannoush RN, Gehring K, Damha MJ.
    J Am Chem Soc; 2003 Sep 24; 125(38):11525-31. PubMed ID: 13129354
    [Abstract] [Full Text] [Related]

  • 9. Structural features of a six-nucleotide RNA hairpin loop found in ribosomal RNA.
    Fountain MA, Serra MJ, Krugh TR, Turner DH.
    Biochemistry; 1996 May 28; 35(21):6539-48. PubMed ID: 8639602
    [Abstract] [Full Text] [Related]

  • 10. Structure and folding dynamics of a DNA hairpin with a stabilising d(GNA) trinucleotide loop: influence of base pair mis-matches and point mutations on conformational equilibria.
    Balkwill GD, Williams HE, Searle MS.
    Org Biomol Chem; 2007 Mar 07; 5(5):832-9. PubMed ID: 17315071
    [Abstract] [Full Text] [Related]

  • 11. Solution structure of an RNA internal loop with three consecutive sheared GA pairs.
    Chen G, Znosko BM, Kennedy SD, Krugh TR, Turner DH.
    Biochemistry; 2005 Mar 01; 44(8):2845-56. PubMed ID: 15723528
    [Abstract] [Full Text] [Related]

  • 12. Structural and energetic consequences of expanding a highly cooperative stable DNA hairpin loop.
    Moody EM, Bevilacqua PC.
    J Am Chem Soc; 2004 Aug 11; 126(31):9570-7. PubMed ID: 15291560
    [Abstract] [Full Text] [Related]

  • 13. Folding cooperativity in RNA and DNA is dependent on position in the helix.
    Siegfried NA, Metzger SL, Bevilacqua PC.
    Biochemistry; 2007 Jan 09; 46(1):172-81. PubMed ID: 17198387
    [Abstract] [Full Text] [Related]

  • 14. Comparison of the thermodynamics and base-pair dynamics of a full LNA:DNA duplex and of the isosequential DNA:DNA duplex.
    Bruylants G, Boccongelli M, Snoussi K, Bartik K.
    Biochemistry; 2009 Sep 08; 48(35):8473-82. PubMed ID: 19670874
    [Abstract] [Full Text] [Related]

  • 15. Folding topology of a bimolecular DNA quadruplex containing a stable mini-hairpin motif within the diagonal loop.
    Balkwill GD, Garner TP, Williams HE, Searle MS.
    J Mol Biol; 2009 Feb 06; 385(5):1600-15. PubMed ID: 19070621
    [Abstract] [Full Text] [Related]

  • 16. Sequence dependence of the stability of RNA hairpin molecules with six nucleotide loops.
    Vecenie CJ, Morrow CV, Zyra A, Serra MJ.
    Biochemistry; 2006 Feb 07; 45(5):1400-7. PubMed ID: 16445282
    [Abstract] [Full Text] [Related]

  • 17. Folding of single-stranded DNA quadruplexes containing an autonomously stable mini-hairpin loop.
    Balkwill GD, Garner TP, Searle MS.
    Mol Biosyst; 2009 May 07; 5(5):542-7. PubMed ID: 19381368
    [Abstract] [Full Text] [Related]

  • 18. Counterion and polythymidine loop-length-dependent folding and thermodynamic stability of DNA hairpins reveal the unusual counterion-dependent stability of tetraloop hairpins.
    Nayak RK, Van Orden A.
    J Phys Chem B; 2013 Nov 14; 117(45):13956-66. PubMed ID: 24144397
    [Abstract] [Full Text] [Related]

  • 19. Exceptionally stable nucleic acid hairpins.
    Varani G.
    Annu Rev Biophys Biomol Struct; 1995 Nov 14; 24():379-404. PubMed ID: 7545040
    [Abstract] [Full Text] [Related]

  • 20. Contribution of the closing base pair to exceptional stability in RNA tetraloops: roles for molecular mimicry and electrostatic factors.
    Blose JM, Proctor DJ, Veeraraghavan N, Misra VK, Bevilacqua PC.
    J Am Chem Soc; 2009 Jun 24; 131(24):8474-84. PubMed ID: 19476351
    [Abstract] [Full Text] [Related]


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