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Journal Abstract Search

170 related items for PubMed ID: 14748001

  • 1. Predicting peptide binding to MHC pockets via molecular modeling, implicit solvation, and global optimization.
    Schafroth HD, Floudas CA.
    Proteins; 2004 Feb 15; 54(3):534-56. PubMed ID: 14748001
    [Abstract] [Full Text] [Related]

  • 2. A predictive method for the evaluation of peptide binding in pocket 1 of HLA-DRB1 via global minimization of energy interactions.
    Androulakis IP, Nayak NN, Ierapetritou MG, Monos DS, Floudas CA.
    Proteins; 1997 Sep 15; 29(1):87-102. PubMed ID: 9294869
    [Abstract] [Full Text] [Related]

  • 3. Structural prediction of peptides binding to MHC class I molecules.
    Bui HH, Schiewe AJ, von Grafenstein H, Haworth IS.
    Proteins; 2006 Apr 01; 63(1):43-52. PubMed ID: 16447245
    [Abstract] [Full Text] [Related]

  • 4. Quantum chemical analysis explains hemagglutinin peptide-MHC Class II molecule HLA-DRbeta1*0101 interactions.
    Cárdenas C, Villaveces JL, Bohórquez H, Llanos E, Suárez C, Obregón M, Patarroyo ME.
    Biochem Biophys Res Commun; 2004 Oct 29; 323(4):1265-77. PubMed ID: 15451434
    [Abstract] [Full Text] [Related]

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  • 6. Changes at the floor of the peptide-binding groove induce a strong preference for proline at position 3 of the bound peptide: molecular dynamics simulations of HLA-A*0217.
    Toh H, Savoie CJ, Kamikawaji N, Muta S, Sasazuki T, Kuhara S.
    Biopolymers; 2000 Oct 15; 54(5):318-27. PubMed ID: 10935972
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  • 8. Structural principles that govern the peptide-binding motifs of class I MHC molecules.
    Zhang C, Anderson A, DeLisi C.
    J Mol Biol; 1998 Sep 04; 281(5):929-47. PubMed ID: 9719645
    [Abstract] [Full Text] [Related]

  • 9. Ab initio prediction of peptide-MHC binding geometry for diverse class I MHC allotypes.
    Bordner AJ, Abagyan R.
    Proteins; 2006 May 15; 63(3):512-26. PubMed ID: 16470819
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  • 11. MHC-peptide binding is assisted by bound water molecules.
    Petrone PM, Garcia AE.
    J Mol Biol; 2004 Apr 23; 338(2):419-35. PubMed ID: 15066441
    [Abstract] [Full Text] [Related]

  • 12. A "solvated rotamer" approach to modeling water-mediated hydrogen bonds at protein-protein interfaces.
    Jiang L, Kuhlman B, Kortemme T, Baker D.
    Proteins; 2005 Mar 01; 58(4):893-904. PubMed ID: 15651050
    [Abstract] [Full Text] [Related]

  • 13. Synthesis and biological evaluation of two chemically modified peptide epitopes for the class I MHC protein HLA-B*2705.
    Jones MA, Hislop AD, Snaith JS.
    Org Biomol Chem; 2006 Oct 21; 4(20):3769-77. PubMed ID: 17024283
    [Abstract] [Full Text] [Related]

  • 14. Structural prediction of peptides bound to MHC class I.
    Fagerberg T, Cerottini JC, Michielin O.
    J Mol Biol; 2006 Feb 17; 356(2):521-46. PubMed ID: 16368108
    [Abstract] [Full Text] [Related]

  • 15. Modifying RESA protein peptide 6671 to fit into HLA-DRbeta1* pockets induces protection against malaria.
    Alba MP, Salazar LM, Vargas LE, Trujillo M, Lopez Y, Patarroyo ME.
    Biochem Biophys Res Commun; 2004 Mar 19; 315(4):1154-64. PubMed ID: 14985134
    [Abstract] [Full Text] [Related]

  • 16. The structural basis of peptide-protein binding strategies.
    London N, Movshovitz-Attias D, Schueler-Furman O.
    Structure; 2010 Feb 10; 18(2):188-99. PubMed ID: 20159464
    [Abstract] [Full Text] [Related]

  • 17. Binding of antifusion peptides with HIVgp41 from molecular dynamics simulations: quantitative correlation with experiment.
    Strockbine B, Rizzo RC.
    Proteins; 2007 May 15; 67(3):630-42. PubMed ID: 17335007
    [Abstract] [Full Text] [Related]

  • 18. Prediction of peptide affinity to HLA DR molecules.
    Marshall KW, Wilson KJ, Liang J, Woods A, Zaller D, Rothbard JB.
    Biomed Pept Proteins Nucleic Acids; 1995 May 15; 1(3):157-62. PubMed ID: 9346847
    [Abstract] [Full Text] [Related]

  • 19. Postprocessing of docked protein-ligand complexes using implicit solvation models.
    Lindström A, Edvinsson L, Johansson A, Andersson CD, Andersson IE, Raubacher F, Linusson A.
    J Chem Inf Model; 2011 Feb 28; 51(2):267-82. PubMed ID: 21309544
    [Abstract] [Full Text] [Related]

  • 20. Characterization of domain-peptide interaction interface: a case study on the amphiphysin-1 SH3 domain.
    Hou T, Zhang W, Case DA, Wang W.
    J Mol Biol; 2008 Feb 29; 376(4):1201-14. PubMed ID: 18206907
    [Abstract] [Full Text] [Related]

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