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Journal Abstract Search

499 related items for PubMed ID: 14962936

  • 1. A comparison of scoring functions for protein sequence profile alignment.
    Edgar RC, Sjölander K.
    Bioinformatics; 2004 May 22; 20(8):1301-8. PubMed ID: 14962936
    [Abstract] [Full Text] [Related]

  • 2. Optimizing the size of the sequence profiles to increase the accuracy of protein sequence alignments generated by profile-profile algorithms.
    Poleksic A, Fienup M.
    Bioinformatics; 2008 May 01; 24(9):1145-53. PubMed ID: 18337259
    [Abstract] [Full Text] [Related]

  • 3. Incremental window-based protein sequence alignment algorithms.
    Rangwala H, Karypis G.
    Bioinformatics; 2007 Jan 15; 23(2):e17-23. PubMed ID: 17237087
    [Abstract] [Full Text] [Related]

  • 4. PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
    Pei J, Grishin NV.
    Bioinformatics; 2007 Apr 01; 23(7):802-8. PubMed ID: 17267437
    [Abstract] [Full Text] [Related]

  • 5. Comparison of linear gap penalties and profile-based variable gap penalties in profile-profile alignments.
    Wang C, Yan RX, Wang XF, Si JN, Zhang Z.
    Comput Biol Chem; 2011 Oct 12; 35(5):308-18. PubMed ID: 22000802
    [Abstract] [Full Text] [Related]

  • 6. Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments.
    Gotoh O.
    J Mol Biol; 1996 Dec 13; 264(4):823-38. PubMed ID: 8980688
    [Abstract] [Full Text] [Related]

  • 7. Quasi-consensus-based comparison of profile hidden Markov models for protein sequences.
    Kahsay RY, Wang G, Gao G, Liao L, Dunbrack R.
    Bioinformatics; 2005 May 15; 21(10):2287-93. PubMed ID: 15797916
    [Abstract] [Full Text] [Related]

  • 8. Use of multiple profiles corresponding to a sequence alignment enables effective detection of remote homologues.
    Anand B, Gowri VS, Srinivasan N.
    Bioinformatics; 2005 Jun 15; 21(12):2821-6. PubMed ID: 15817691
    [Abstract] [Full Text] [Related]

  • 9. Evaluation of PSI-BLAST alignment accuracy in comparison to structural alignments.
    Friedberg I, Kaplan T, Margalit H.
    Protein Sci; 2000 Nov 15; 9(11):2278-84. PubMed ID: 11152139
    [Abstract] [Full Text] [Related]

  • 10. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
    Bininda-Emonds OR.
    BMC Bioinformatics; 2005 Jun 22; 6():156. PubMed ID: 15969769
    [Abstract] [Full Text] [Related]

  • 11. COACH: profile-profile alignment of protein families using hidden Markov models.
    Edgar RC, Sjölander K.
    Bioinformatics; 2004 May 22; 20(8):1309-18. PubMed ID: 14962937
    [Abstract] [Full Text] [Related]

  • 12. SPEM: improving multiple sequence alignment with sequence profiles and predicted secondary structures.
    Zhou H, Zhou Y.
    Bioinformatics; 2005 Sep 15; 21(18):3615-21. PubMed ID: 16020471
    [Abstract] [Full Text] [Related]

  • 13. A new progressive-iterative algorithm for multiple structure alignment.
    Lupyan D, Leo-Macias A, Ortiz AR.
    Bioinformatics; 2005 Aug 01; 21(15):3255-63. PubMed ID: 15941743
    [Abstract] [Full Text] [Related]

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  • 16. Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles.
    Kundrotas PJ, Lensink MF, Alexov E.
    Int J Biol Macromol; 2008 Aug 15; 43(2):198-208. PubMed ID: 18572239
    [Abstract] [Full Text] [Related]

  • 17. NdPASA: a novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities.
    Wang J, Feng JA.
    Proteins; 2005 Feb 15; 58(3):628-37. PubMed ID: 15616964
    [Abstract] [Full Text] [Related]

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  • 19. Multiple alignment by sequence annealing.
    Schwartz AS, Pachter L.
    Bioinformatics; 2007 Jan 15; 23(2):e24-9. PubMed ID: 17237099
    [Abstract] [Full Text] [Related]

  • 20. Distant homology detection using a LEngth and STructure-based sequence Alignment Tool (LESTAT).
    Lee MM, Bundschuh R, Chan MK.
    Proteins; 2008 May 15; 71(3):1409-19. PubMed ID: 18076050
    [Abstract] [Full Text] [Related]

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