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Journal Abstract Search


121 related items for PubMed ID: 14971956

  • 21. Insights into activation and RNA binding of trp RNA-binding attenuation protein (TRAP) through all-atom simulations.
    Murtola T, Vattulainen I, Falck E.
    Proteins; 2008 Jun; 71(4):1995-2011. PubMed ID: 18186477
    [Abstract] [Full Text] [Related]

  • 22. The structure and IR signatures of the arginine-glutamate salt bridge. Insights from the classical MD simulations.
    Vener MV, Odinokov AV, Wehmeyer C, Sebastiani D.
    J Chem Phys; 2015 Jun 07; 142(21):215106. PubMed ID: 26049530
    [Abstract] [Full Text] [Related]

  • 23. Dynamics and cooperativity of Trp-cage folding.
    Hu Z, Tang Y, Wang H, Zhang X, Lei M.
    Arch Biochem Biophys; 2008 Jul 15; 475(2):140-7. PubMed ID: 18474213
    [Abstract] [Full Text] [Related]

  • 24. Insights into thermal stability of thermophilic nitrile hydratases by molecular dynamics simulation.
    Liu J, Yu H, Shen Z.
    J Mol Graph Model; 2008 Nov 15; 27(4):529-35. PubMed ID: 18948044
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  • 25. Stabilization of beta-hairpin peptides by salt bridges: role of preorganization in the energetic contribution of weak interactions.
    Ciani B, Jourdan M, Searle MS.
    J Am Chem Soc; 2003 Jul 30; 125(30):9038-47. PubMed ID: 15369359
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  • 26. Protein thermal stability enhancement by designing salt bridges: a combined computational and experimental study.
    Lee CW, Wang HJ, Hwang JK, Tseng CP.
    PLoS One; 2014 Jul 30; 9(11):e112751. PubMed ID: 25393107
    [Abstract] [Full Text] [Related]

  • 27. Electrostatic interactions involving lysine make major contributions to collagen triple-helix stability.
    Persikov AV, Ramshaw JA, Kirkpatrick A, Brodsky B.
    Biochemistry; 2005 Feb 08; 44(5):1414-22. PubMed ID: 15683226
    [Abstract] [Full Text] [Related]

  • 28. High-resolution X-ray structure of the unexpectedly stable dimer of the [Lys(-2)-Arg(-1)-des(17-21)]endothelin-1 peptide.
    Hoh F, Cerdan R, Kaas Q, Nishi Y, Chiche L, Kubo S, Chino N, Kobayashi Y, Dumas C, Aumelas A.
    Biochemistry; 2004 Dec 07; 43(48):15154-68. PubMed ID: 15568807
    [Abstract] [Full Text] [Related]

  • 29. Calculation of protein heat capacity from replica-exchange molecular dynamics simulations with different implicit solvent models.
    Yeh IC, Lee MS, Olson MA.
    J Phys Chem B; 2008 Nov 27; 112(47):15064-73. PubMed ID: 18959439
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  • 30. Characterization of salt bridges to lysines in the protein G B1 domain.
    Tomlinson JH, Ullah S, Hansen PE, Williamson MP.
    J Am Chem Soc; 2009 Apr 08; 131(13):4674-84. PubMed ID: 19281232
    [Abstract] [Full Text] [Related]

  • 31. Characterization of the denaturation of human alpha-lactalbumin in urea by molecular dynamics simulations.
    Smith LJ, Jones RM, van Gunsteren WF.
    Proteins; 2005 Feb 01; 58(2):439-49. PubMed ID: 15558602
    [Abstract] [Full Text] [Related]

  • 32. Molecular dynamics simulations and free energy analyses on the dimer formation of an amyloidogenic heptapeptide from human beta2-microglobulin: implication for the protofibril structure.
    Lei H, Wu C, Wang Z, Duan Y.
    J Mol Biol; 2006 Mar 03; 356(4):1049-63. PubMed ID: 16403526
    [Abstract] [Full Text] [Related]

  • 33. Contribution of a putative salt bridge and backbone dynamics in the structural instability of human prion protein upon R208H mutation.
    Bamdad K, Naderi-Manesh H.
    Biochem Biophys Res Commun; 2007 Dec 28; 364(4):719-24. PubMed ID: 17980350
    [Abstract] [Full Text] [Related]

  • 34. Simulated annealing coupled replica exchange molecular dynamics--an efficient conformational sampling method.
    Kannan S, Zacharias M.
    J Struct Biol; 2009 Jun 28; 166(3):288-94. PubMed ID: 19272454
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  • 35. Incorporating receptor flexibility in the molecular design of protein interfaces.
    Li L, Liang S, Pilcher MM, Meroueh SO.
    Protein Eng Des Sel; 2009 Sep 28; 22(9):575-86. PubMed ID: 19643976
    [Abstract] [Full Text] [Related]

  • 36. The role of plastic beta-hairpin and weak hydrophobic core in the stability and unfolding of a full sequence design protein.
    Lei H, Duan Y.
    J Chem Phys; 2004 Dec 15; 121(23):12104-11. PubMed ID: 15634176
    [Abstract] [Full Text] [Related]

  • 37. Effects of ligand binding on the dynamics of rice nonspecific lipid transfer protein 1: a model from molecular simulations.
    Lai YT, Cheng CS, Liu YN, Liu YJ, Lyu PC.
    Proteins; 2008 Sep 15; 72(4):1189-98. PubMed ID: 18338386
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  • 38. Relative strength of cation-pi vs salt-bridge interactions: the Gtalpha(340-350) peptide/rhodopsin system.
    Anderson MA, Ogbay B, Arimoto R, Sha W, Kisselev OG, Cistola DP, Marshall GR.
    J Am Chem Soc; 2006 Jun 14; 128(23):7531-41. PubMed ID: 16756308
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  • 39. Functional impact of polar and acidic substitutions in the lactose repressor hydrophobic monomer.monomer interface with a buried lysine.
    Zhan H, Sun Z, Matthews KS.
    Biochemistry; 2009 Feb 17; 48(6):1305-14. PubMed ID: 19166325
    [Abstract] [Full Text] [Related]

  • 40. Effect of ions on the hydrophobic interaction between two plates.
    Zangi R, Hagen M, Berne BJ.
    J Am Chem Soc; 2007 Apr 18; 129(15):4678-86. PubMed ID: 17378564
    [Abstract] [Full Text] [Related]


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