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Journal Abstract Search

69 related items for PubMed ID: 14983071

  • 1. Multiple structural alignment for distantly related all beta structures using TOPS pattern discovery and simulated annealing.
    Williams A, Gilbert DR, Westhead DR.
    Protein Eng; 2003 Dec; 16(12):913-23. PubMed ID: 14983071
    [Abstract] [Full Text] [Related]

  • 2. CAALIGN: a program for pairwise and multiple protein-structure alignment.
    Oldfield TJ.
    Acta Crystallogr D Biol Crystallogr; 2007 Apr; 63(Pt 4):514-25. PubMed ID: 17372357
    [Abstract] [Full Text] [Related]

  • 3. MUSTANG: a multiple structural alignment algorithm.
    Konagurthu AS, Whisstock JC, Stuckey PJ, Lesk AM.
    Proteins; 2006 Aug 15; 64(3):559-74. PubMed ID: 16736488
    [Abstract] [Full Text] [Related]

  • 4. The emergence of catalytic and structural diversity within the beta-clip fold.
    Iyer LM, Aravind L.
    Proteins; 2004 Jun 01; 55(4):977-91. PubMed ID: 15146494
    [Abstract] [Full Text] [Related]

  • 5. AdoMet radical proteins--from structure to evolution--alignment of divergent protein sequences reveals strong secondary structure element conservation.
    Nicolet Y, Drennan CL.
    Nucleic Acids Res; 2004 Jun 01; 32(13):4015-25. PubMed ID: 15289575
    [Abstract] [Full Text] [Related]

  • 6. DPANN: improved sequence to structure alignments following fold recognition.
    Reinhardt A, Eisenberg D.
    Proteins; 2004 Aug 15; 56(3):528-38. PubMed ID: 15229885
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  • 11. Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming.
    Sali A, Blundell TL.
    J Mol Biol; 1990 Mar 20; 212(2):403-28. PubMed ID: 2181150
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  • 12. TOPS: an enhanced database of protein structural topology.
    Michalopoulos I, Torrance GM, Gilbert DR, Westhead DR.
    Nucleic Acids Res; 2004 Jan 01; 32(Database issue):D251-4. PubMed ID: 14681405
    [Abstract] [Full Text] [Related]

  • 13. Prediction of protein secondary structure content for the twilight zone sequences.
    Homaeian L, Kurgan LA, Ruan J, Cios KJ, Chen K.
    Proteins; 2007 Nov 15; 69(3):486-98. PubMed ID: 17623861
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  • 14. CORA--topological fingerprints for protein structural families.
    Orengo CA.
    Protein Sci; 1999 Apr 15; 8(4):699-715. PubMed ID: 10211816
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  • 15. [Information about the protein secondary structure improves quality of an alignment of protein sequences].
    Litvinov II, Lobanov MIu, Mironov AA, Finkel'shtĭn MA.
    Mol Biol (Mosk); 2006 Apr 15; 40(3):533-40. PubMed ID: 16813172
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  • 17. Crystal structure of a type-II cohesin module from the Bacteroides cellulosolvens cellulosome reveals novel and distinctive secondary structural elements.
    Noach I, Frolow F, Jakoby H, Rosenheck S, Shimon LW, Lamed R, Bayer EA.
    J Mol Biol; 2005 Apr 22; 348(1):1-12. PubMed ID: 15808849
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  • 18. PFRES: protein fold classification by using evolutionary information and predicted secondary structure.
    Chen K, Kurgan L.
    Bioinformatics; 2007 Nov 01; 23(21):2843-50. PubMed ID: 17942446
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  • 19. Fold recognition and accurate sequence-structure alignment of sequences directing beta-sheet proteins.
    McDonnell AV, Menke M, Palmer N, King J, Cowen L, Berger B.
    Proteins; 2006 Jun 01; 63(4):976-85. PubMed ID: 16547930
    [Abstract] [Full Text] [Related]

  • 20. [Membrane probability profile construction based on amino acids sequences multiple alignment].
    Sutormin RA, Mironov AA.
    Mol Biol (Mosk); 2006 Jun 01; 40(3):541-5. PubMed ID: 16813173
    [Abstract] [Full Text] [Related]

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