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Journal Abstract Search

125 related items for PubMed ID: 15059829

  • 21. APDB: a novel measure for benchmarking sequence alignment methods without reference alignments.
    O'Sullivan O, Zehnder M, Higgins D, Bucher P, Grosdidier A, Notredame C.
    Bioinformatics; 2003; 19 Suppl 1():i215-21. PubMed ID: 12855461
    [Abstract] [Full Text] [Related]

  • 22. SITEBLAST--rapid and sensitive local alignment of genomic sequences employing motif anchors.
    Michael M, Dieterich C, Vingron M.
    Bioinformatics; 2005 May 01; 21(9):2093-4. PubMed ID: 15598827
    [Abstract] [Full Text] [Related]

  • 23. Sfixem--graphical sequence feature display in Java.
    Chalk AM, Wennerberg M, Sonnhammer EL.
    Bioinformatics; 2004 Oct 12; 20(15):2488-90. PubMed ID: 15087316
    [Abstract] [Full Text] [Related]

  • 24. Libsequence: a C++ class library for evolutionary genetic analysis.
    Thornton K.
    Bioinformatics; 2003 Nov 22; 19(17):2325-7. PubMed ID: 14630667
    [Abstract] [Full Text] [Related]

  • 25. Computational analysis of stop codon readthrough in D.melanogaster.
    Sato M, Umeki H, Saito R, Kanai A, Tomita M.
    Bioinformatics; 2003 Jul 22; 19(11):1371-80. PubMed ID: 12874049
    [Abstract] [Full Text] [Related]

  • 26. An introduction to recognizing functional domains.
    Stormo GD.
    Curr Protoc Bioinformatics; 2006 Oct 22; Chapter 2():Unit 2.1. PubMed ID: 18428762
    [Abstract] [Full Text] [Related]

  • 27. MREPATT: detection and analysis of exact consecutive repeats in genomic sequences.
    Roset R, Subirana JA, Messeguer X.
    Bioinformatics; 2003 Dec 12; 19(18):2475-6. PubMed ID: 14668235
    [Abstract] [Full Text] [Related]

  • 28. PoInTree: a polar and interactive phylogenetic tree.
    Carreras M, Gianti E, Sartori L, Plyte SE, Isacchi A, Bosotti R.
    Genomics Proteomics Bioinformatics; 2005 Feb 12; 3(1):58-60. PubMed ID: 16144524
    [Abstract] [Full Text] [Related]

  • 29. CTX-BLAST: context sensitive version of protein BLAST.
    Gambin A, Wojtalewicz P.
    Bioinformatics; 2007 Jul 01; 23(13):1686-8. PubMed ID: 17459964
    [Abstract] [Full Text] [Related]

  • 30. SWIFT (sequence-wide investigation with Fourier transform): a software tool for identifying proteins of a given class from the unannotated genome sequence.
    D'Avenio G, Grigioni M, Orefici G, Creti R.
    Bioinformatics; 2005 Jul 01; 21(13):2943-9. PubMed ID: 15860563
    [Abstract] [Full Text] [Related]

  • 31. Simplifying gene trees for easier comprehension.
    Lott PL, Mundry M, Sassenberg C, Lorkowski S, Fuellen G.
    BMC Bioinformatics; 2006 Apr 27; 7():231. PubMed ID: 16643669
    [Abstract] [Full Text] [Related]

  • 32. MISFITS: evaluating the goodness of fit between a phylogenetic model and an alignment.
    Nguyen MA, Klaere S, von Haeseler A.
    Mol Biol Evol; 2011 Jan 27; 28(1):143-52. PubMed ID: 20643866
    [Abstract] [Full Text] [Related]

  • 33. Statistics of protein library construction.
    Firth AE, Patrick WM.
    Bioinformatics; 2005 Aug 01; 21(15):3314-5. PubMed ID: 15932904
    [Abstract] [Full Text] [Related]

  • 34. Improvement in protein sequence-structure alignment using insertion/deletion frequency arrays.
    Ellrott K, Guo JT, Olman V, Xu Y.
    Comput Syst Bioinformatics Conf; 2007 Aug 01; 6():335-42. PubMed ID: 17951836
    [Abstract] [Full Text] [Related]

  • 35. TANDEM: matching proteins with tandem mass spectra.
    Craig R, Beavis RC.
    Bioinformatics; 2004 Jun 12; 20(9):1466-7. PubMed ID: 14976030
    [Abstract] [Full Text] [Related]

  • 36. Datamonkey: rapid detection of selective pressure on individual sites of codon alignments.
    Pond SL, Frost SD.
    Bioinformatics; 2005 May 15; 21(10):2531-3. PubMed ID: 15713735
    [Abstract] [Full Text] [Related]

  • 37. Bellerophon: a program to detect chimeric sequences in multiple sequence alignments.
    Huber T, Faulkner G, Hugenholtz P.
    Bioinformatics; 2004 Sep 22; 20(14):2317-9. PubMed ID: 15073015
    [Abstract] [Full Text] [Related]

  • 38. FramePlus: aligning DNA to protein sequences.
    Halperin E, Faigler S, Gill-More R.
    Bioinformatics; 1999 Nov 22; 15(11):867-73. PubMed ID: 10743553
    [Abstract] [Full Text] [Related]

  • 39. Clustal W and Clustal X version 2.0.
    Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG.
    Bioinformatics; 2007 Nov 01; 23(21):2947-8. PubMed ID: 17846036
    [Abstract] [Full Text] [Related]

  • 40. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
    Bininda-Emonds OR.
    BMC Bioinformatics; 2005 Jun 22; 6():156. PubMed ID: 15969769
    [Abstract] [Full Text] [Related]

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