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Journal Abstract Search

172 related items for PubMed ID: 15072689

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  • 4. Finding homologs in amino acid sequences using network BLAST searches.
    Ladunga I.
    Curr Protoc Bioinformatics; 2003 Feb; Chapter 3():Unit 3.4. PubMed ID: 18428697
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  • 6. SQUINT: a multiple alignment program and editor.
    Goode MG, Rodrigo AG.
    Bioinformatics; 2007 Jun 15; 23(12):1553-5. PubMed ID: 17485434
    [Abstract] [Full Text] [Related]

  • 7. BlastXtract--a new way of exploring translated searches.
    Claesson MJ, van Sinderen D.
    Bioinformatics; 2005 Sep 15; 21(18):3667-8. PubMed ID: 16046492
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  • 8. Database similarity searches.
    Plewniak F.
    Methods Mol Biol; 2008 Sep 15; 484():361-78. PubMed ID: 18592192
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  • 9. Provably sensitive indexing strategies for biosequence similarity search.
    Buhler J.
    J Comput Biol; 2003 Sep 15; 10(3-4):399-417. PubMed ID: 13677335
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  • 10. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
    Bininda-Emonds OR.
    BMC Bioinformatics; 2005 Jun 22; 6():156. PubMed ID: 15969769
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  • 11. OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
    Raghava GP, Searle SM, Audley PC, Barber JD, Barton GJ.
    BMC Bioinformatics; 2003 Oct 10; 4():47. PubMed ID: 14552658
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  • 12. Windows .NET Network Distributed Basic Local Alignment Search Toolkit (W.ND-BLAST).
    Dowd SE, Zaragoza J, Rodriguez JR, Oliver MJ, Payton PR.
    BMC Bioinformatics; 2005 Apr 08; 6():93. PubMed ID: 15819992
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  • 13. FastBLAST: homology relationships for millions of proteins.
    Price MN, Dehal PS, Arkin AP.
    PLoS One; 2008 Apr 08; 3(10):e3589. PubMed ID: 18974889
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  • 14. NdPASA: a novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities.
    Wang J, Feng JA.
    Proteins; 2005 Feb 15; 58(3):628-37. PubMed ID: 15616964
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  • 15. Nested Containment List (NCList): a new algorithm for accelerating interval query of genome alignment and interval databases.
    Alekseyenko AV, Lee CJ.
    Bioinformatics; 2007 Jun 01; 23(11):1386-93. PubMed ID: 17234640
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  • 16. eProbalign: generation and manipulation of multiple sequence alignments using partition function posterior probabilities.
    Chikkagoudar S, Roshan U, Livesay D.
    Nucleic Acids Res; 2007 Jul 01; 35(Web Server issue):W675-7. PubMed ID: 17485479
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  • 17. Statistics of local multiple alignments.
    Prakash A, Tompa M.
    Bioinformatics; 2005 Jun 01; 21 Suppl 1():i344-50. PubMed ID: 15961477
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  • 18. Assessing the discordance of multiple sequence alignments.
    Prakash A, Tompa M.
    IEEE/ACM Trans Comput Biol Bioinform; 2009 Jun 01; 6(4):542-51. PubMed ID: 19875854
    [Abstract] [Full Text] [Related]

  • 19. MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes.
    Marinescu VD, Kohane IS, Riva A.
    BMC Bioinformatics; 2005 Mar 30; 6():79. PubMed ID: 15799782
    [Abstract] [Full Text] [Related]

  • 20. COMPASS server for remote homology inference.
    Sadreyev RI, Tang M, Kim BH, Grishin NV.
    Nucleic Acids Res; 2007 Jul 30; 35(Web Server issue):W653-8. PubMed ID: 17517780
    [Abstract] [Full Text] [Related]

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