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Journal Abstract Search

117 related items for PubMed ID: 15262788

  • 21. High-throughput identification of transcription start sites, conserved promoter motifs and predicted regulons.
    McGrath PT, Lee H, Zhang L, Iniesta AA, Hottes AK, Tan MH, Hillson NJ, Hu P, Shapiro L, McAdams HH.
    Nat Biotechnol; 2007 May; 25(5):584-92. PubMed ID: 17401361
    [Abstract] [Full Text] [Related]

  • 22. Comparative integromics on FZD7 orthologs: conserved binding sites for PU.1, SP1, CCAAT-box and TCF/LEF/SOX transcription factors within 5'-promoter region of mammalian FZD7 orthologs.
    Katoh M, Katoh M.
    Int J Mol Med; 2007 Mar; 19(3):529-33. PubMed ID: 17273804
    [Abstract] [Full Text] [Related]

  • 23. Improvement of TRANSFAC matrices using multiple local alignment of transcription factor binding site sequences.
    Fu Y, Weng Z.
    Genome Inform; 2005 Mar; 16(1):68-72. PubMed ID: 16362908
    [Abstract] [Full Text] [Related]

  • 24. Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens.
    Yan B, Lovley DR, Krushkal J.
    Biosystems; 2007 Mar; 90(2):421-41. PubMed ID: 17184904
    [Abstract] [Full Text] [Related]

  • 25. Informative priors based on transcription factor structural class improve de novo motif discovery.
    Narlikar L, Gordân R, Ohler U, Hartemink AJ.
    Bioinformatics; 2006 Jul 15; 22(14):e384-92. PubMed ID: 16873497
    [Abstract] [Full Text] [Related]

  • 26. A comparative analysis of relative occurrence of transcription factor binding sites in vertebrate genomes and gene promoter areas.
    Stepanova M, Tiazhelova T, Skoblov M, Baranova A.
    Bioinformatics; 2005 May 01; 21(9):1789-96. PubMed ID: 15699025
    [Abstract] [Full Text] [Related]

  • 27. Enhanced position weight matrices using mixture models.
    Hannenhalli S, Wang LS.
    Bioinformatics; 2005 Jun 01; 21 Suppl 1():i204-12. PubMed ID: 15961459
    [Abstract] [Full Text] [Related]

  • 28. MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes.
    Pavesi G, Mereghetti P, Zambelli F, Stefani M, Mauri G, Pesole G.
    Nucleic Acids Res; 2006 Jul 01; 34(Web Server issue):W566-70. PubMed ID: 16845071
    [Abstract] [Full Text] [Related]

  • 29. STOP: searching for transcription factor motifs using gene expression.
    Hertzberg L, Izraeli S, Domany E.
    Bioinformatics; 2007 Jul 15; 23(14):1737-43. PubMed ID: 17488754
    [Abstract] [Full Text] [Related]

  • 30. Natural similarity measures between position frequency matrices with an application to clustering.
    Pape UJ, Rahmann S, Vingron M.
    Bioinformatics; 2008 Feb 01; 24(3):350-7. PubMed ID: 18174183
    [Abstract] [Full Text] [Related]

  • 31. Comparative promoter region analysis powered by CORG.
    Dieterich C, Grossmann S, Tanzer A, Röpcke S, Arndt PF, Stadler PF, Vingron M.
    BMC Genomics; 2005 Feb 21; 6():24. PubMed ID: 15723697
    [Abstract] [Full Text] [Related]

  • 32. Integrating genomic data to predict transcription factor binding.
    Holloway DT, Kon M, DeLisi C.
    Genome Inform; 2005 Feb 21; 16(1):83-94. PubMed ID: 16362910
    [Abstract] [Full Text] [Related]

  • 33. Exploring transcription factor binding properties of several non-coding DNA sequence elements in the human NF-IL6 gene.
    Pares-Matos EI, Milligan JS, Bina M.
    J Mol Biol; 2006 Mar 31; 357(3):732-47. PubMed ID: 16458921
    [Abstract] [Full Text] [Related]

  • 34. Discovery of sequence motifs related to coexpression of genes using evolutionary computation.
    Fogel GB, Weekes DG, Varga G, Dow ER, Harlow HB, Onyia JE, Su C.
    Nucleic Acids Res; 2004 Mar 31; 32(13):3826-35. PubMed ID: 15266008
    [Abstract] [Full Text] [Related]

  • 35. An equilibrium partitioning model connecting gene expression and cis-motif content.
    Mellor J, DeLisi C.
    Bioinformatics; 2006 Jul 15; 22(14):e368-74. PubMed ID: 16873495
    [Abstract] [Full Text] [Related]

  • 36. Into the heart of darkness: large-scale clustering of human non-coding DNA.
    Bejerano G, Haussler D, Blanchette M.
    Bioinformatics; 2004 Aug 04; 20 Suppl 1():i40-8. PubMed ID: 15262779
    [Abstract] [Full Text] [Related]

  • 37. Context specific transcription factor prediction.
    Yang E, Simcha D, Almon RR, Dubois DC, Jusko WJ, Androulakis IP.
    Ann Biomed Eng; 2007 Jun 04; 35(6):1053-67. PubMed ID: 17377845
    [Abstract] [Full Text] [Related]

  • 38. Evaluating phylogenetic footprinting for human-rodent comparisons.
    Sauer T, Shelest E, Wingender E.
    Bioinformatics; 2006 Feb 15; 22(4):430-7. PubMed ID: 16332706
    [Abstract] [Full Text] [Related]

  • 39. Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes.
    Polak P, Domany E.
    BMC Genomics; 2006 Jun 01; 7():133. PubMed ID: 16740159
    [Abstract] [Full Text] [Related]

  • 40. SNPs in putative regulatory regions identified by human mouse comparative sequencing and transcription factor binding site data.
    Banerjee P, Bahlo M, Schwartz JR, Loots GG, Houston KA, Dubchak I, Speed TP, Rubin EM.
    Mamm Genome; 2002 Oct 01; 13(10):554-7. PubMed ID: 12420132
    [No Abstract] [Full Text] [Related]

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