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Journal Abstract Search

2728 related items for PubMed ID: 15268287

  • 1. Contact pair dynamics during folding of two small proteins: chicken villin head piece and the Alzheimer protein beta-amyloid.
    Mukherjee A, Bagchi B.
    J Chem Phys; 2004 Jan 15; 120(3):1602-12. PubMed ID: 15268287
    [Abstract] [Full Text] [Related]

  • 2. Large-scale context in protein folding: villin headpiece.
    Fernández A, Shen MY, Colubri A, Sosnick TR, Berry RS, Freed KF.
    Biochemistry; 2003 Jan 28; 42(3):664-71. PubMed ID: 12534278
    [Abstract] [Full Text] [Related]

  • 3. Differential stabilization of two hydrophobic cores in the transition state of the villin 14T folding reaction.
    Choe SE, Li L, Matsudaira PT, Wagner G, Shakhnovich EI.
    J Mol Biol; 2000 Nov 17; 304(1):99-115. PubMed ID: 11071813
    [Abstract] [Full Text] [Related]

  • 4. Dynamic folding pathway models of the villin headpiece subdomain (HP-36) structure.
    Lee IH, Kim SY, Lee J.
    J Comput Chem; 2010 Jan 15; 31(1):57-65. PubMed ID: 19412905
    [Abstract] [Full Text] [Related]

  • 5. Conformation spaces of proteins.
    Sullivan DC, Kuntz ID.
    Proteins; 2001 Mar 01; 42(4):495-511. PubMed ID: 11170204
    [Abstract] [Full Text] [Related]

  • 6. Exploration of the secondary structure specific differential solvation dynamics between the native and molten globule states of the protein HP-36.
    Bandyopadhyay S, Chakraborty S, Bagchi B.
    J Phys Chem B; 2006 Oct 19; 110(41):20629-34. PubMed ID: 17034252
    [Abstract] [Full Text] [Related]

  • 7. Coupling between hydration layer dynamics and unfolding kinetics of HP-36.
    Bandyopadhyay S, Chakraborty S, Bagchi B.
    J Chem Phys; 2006 Aug 28; 125(8):084912. PubMed ID: 16965062
    [Abstract] [Full Text] [Related]

  • 8. Ab initio folding of helix bundle proteins using molecular dynamics simulations.
    Jang S, Kim E, Shin S, Pak Y.
    J Am Chem Soc; 2003 Dec 03; 125(48):14841-6. PubMed ID: 14640661
    [Abstract] [Full Text] [Related]

  • 9. Modeling the alpha-helix to beta-hairpin transition mechanism and the formation of oligomeric aggregates of the fibrillogenic peptide Abeta(12-28): insights from all-atom molecular dynamics simulations.
    Simona F, Tiana G, Broglia RA, Colombo G.
    J Mol Graph Model; 2004 Dec 03; 23(3):263-73. PubMed ID: 15530822
    [Abstract] [Full Text] [Related]

  • 10. NMR characterization of a peptide model provides evidence for significant structure in the unfolded state of the villin headpiece helical subdomain.
    Tang Y, Goger MJ, Raleigh DP.
    Biochemistry; 2006 Jun 06; 45(22):6940-6. PubMed ID: 16734429
    [Abstract] [Full Text] [Related]

  • 11. Microsecond scale replica exchange molecular dynamic simulation of villin headpiece: an insight into the folding landscape.
    Jani V, Sonavane UB, Joshi R.
    J Biomol Struct Dyn; 2011 Jun 06; 28(6):845-60. PubMed ID: 21469746
    [Abstract] [Full Text] [Related]

  • 12. Molecular dynamics simulations of a beta-hairpin fragment of protein G: balance between side-chain and backbone forces.
    Ma B, Nussinov R.
    J Mol Biol; 2000 Mar 03; 296(4):1091-104. PubMed ID: 10686106
    [Abstract] [Full Text] [Related]

  • 13. Enhanced ab initio protein folding simulations in Poisson-Boltzmann molecular dynamics with self-guiding forces.
    Wen EZ, Hsieh MJ, Kollman PA, Luo R.
    J Mol Graph Model; 2004 May 03; 22(5):415-24. PubMed ID: 15099837
    [Abstract] [Full Text] [Related]

  • 14. Lattice models for proteins reveal multiple folding nuclei for nucleation-collapse mechanism.
    Klimov DK, Thirumalai D.
    J Mol Biol; 1998 Sep 18; 282(2):471-92. PubMed ID: 9735420
    [Abstract] [Full Text] [Related]

  • 15. Folding landscapes of the Alzheimer amyloid-beta(12-28) peptide.
    Baumketner A, Shea JE.
    J Mol Biol; 2006 Sep 22; 362(3):567-79. PubMed ID: 16930617
    [Abstract] [Full Text] [Related]

  • 16. Folding mechanisms of proteins with high sequence identity but different folds.
    Scott KA, Daggett V.
    Biochemistry; 2007 Feb 13; 46(6):1545-56. PubMed ID: 17279619
    [Abstract] [Full Text] [Related]

  • 17. Design of amino acid sequences to fold into C(alpha)-model proteins.
    Amatori A, Tiana G, Sutto L, Ferkinghoff-Borg J, Trovato A, Broglia RA.
    J Chem Phys; 2005 Aug 01; 123(5):054904. PubMed ID: 16108690
    [Abstract] [Full Text] [Related]

  • 18. Identifying folding nucleus based on residue contact networks of proteins.
    Li J, Wang J, Wang W.
    Proteins; 2008 Jun 01; 71(4):1899-907. PubMed ID: 18175318
    [Abstract] [Full Text] [Related]

  • 19. The world of beta- and gamma-peptides comprised of homologated proteinogenic amino acids and other components.
    Seebach D, Beck AK, Bierbaum DJ.
    Chem Biodivers; 2004 Aug 01; 1(8):1111-239. PubMed ID: 17191902
    [Abstract] [Full Text] [Related]

  • 20. Optimum folding pathways for growing protein chains.
    Senturk S, Baday S, Arkun Y, Erman B.
    Phys Biol; 2007 Nov 26; 4(4):305-16. PubMed ID: 18185008
    [Abstract] [Full Text] [Related]

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