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Journal Abstract Search

230 related items for PubMed ID: 15328620

  • 1. Diffusing and colliding: the atomic level folding/unfolding pathway of a small helical protein.
    DeMarco ML, Alonso DO, Daggett V.
    J Mol Biol; 2004 Aug 20; 341(4):1109-24. PubMed ID: 15328620
    [Abstract] [Full Text] [Related]

  • 2. Thermal unfolding simulations of a multimeric protein--transition state and unfolding pathways.
    Duan J, Nilsson L.
    Proteins; 2005 May 01; 59(2):170-82. PubMed ID: 15723359
    [Abstract] [Full Text] [Related]

  • 3. Identification and characterization of the unfolding transition state of chymotrypsin inhibitor 2 by molecular dynamics simulations.
    Li A, Daggett V.
    J Mol Biol; 1996 Mar 29; 257(2):412-29. PubMed ID: 8609633
    [Abstract] [Full Text] [Related]

  • 4. The folding pathway of ubiquitin from all-atom molecular dynamics simulations.
    Marianayagam NJ, Jackson SE.
    Biophys Chem; 2004 Oct 01; 111(2):159-71. PubMed ID: 15381313
    [Abstract] [Full Text] [Related]

  • 5. Replica exchange simulation of reversible folding/unfolding of the Trp-cage miniprotein in explicit solvent: on the structure and possible role of internal water.
    Paschek D, Nymeyer H, García AE.
    J Struct Biol; 2007 Mar 01; 157(3):524-33. PubMed ID: 17293125
    [Abstract] [Full Text] [Related]

  • 6. Unfolding transition state and intermediates of the tumor suppressor p16INK4a investigated by molecular dynamics simulations.
    Interlandi G, Settanni G, Caflisch A.
    Proteins; 2006 Jul 01; 64(1):178-92. PubMed ID: 16596641
    [Abstract] [Full Text] [Related]

  • 7. Methods for molecular dynamics simulations of protein folding/unfolding in solution.
    Beck DA, Daggett V.
    Methods; 2004 Sep 01; 34(1):112-20. PubMed ID: 15283920
    [Abstract] [Full Text] [Related]

  • 8. Essential dynamics of reversible peptide folding: memory-free conformational dynamics governed by internal hydrogen bonds.
    de Groot BL, Daura X, Mark AE, Grubmüller H.
    J Mol Biol; 2001 May 25; 309(1):299-313. PubMed ID: 11491298
    [Abstract] [Full Text] [Related]

  • 9. Structural analysis of a helical peptide unfolding pathway.
    Diana D, Ziaco B, Scarabelli G, Pedone C, Colombo G, D'Andrea LD, Fattorusso R.
    Chemistry; 2010 May 10; 16(18):5400-7. PubMed ID: 20358558
    [Abstract] [Full Text] [Related]

  • 10. Characterization of the folding and unfolding reactions of single-chain monellin: evidence for multiple intermediates and competing pathways.
    Patra AK, Udgaonkar JB.
    Biochemistry; 2007 Oct 23; 46(42):11727-43. PubMed ID: 17902706
    [Abstract] [Full Text] [Related]

  • 11. Equilibrium unfolding (folding) pathway of a model H-type pseudoknotted RNA: the role of magnesium ions in stability.
    Nixon PL, Giedroc DP.
    Biochemistry; 1998 Nov 17; 37(46):16116-29. PubMed ID: 9819204
    [Abstract] [Full Text] [Related]

  • 12. Coupling between hydration layer dynamics and unfolding kinetics of HP-36.
    Bandyopadhyay S, Chakraborty S, Bagchi B.
    J Chem Phys; 2006 Aug 28; 125(8):084912. PubMed ID: 16965062
    [Abstract] [Full Text] [Related]

  • 13. Folding mechanisms of proteins with high sequence identity but different folds.
    Scott KA, Daggett V.
    Biochemistry; 2007 Feb 13; 46(6):1545-56. PubMed ID: 17279619
    [Abstract] [Full Text] [Related]

  • 14. General dynamic properties of Abeta12-36 amyloid peptide involved in Alzheimer's disease from unfolding simulation.
    Suzuki S, Galzitskaya OV, Mitomo D, Higo J.
    J Biochem; 2004 Nov 13; 136(5):583-94. PubMed ID: 15632297
    [Abstract] [Full Text] [Related]

  • 15. Application of the diffusion-collision model to the folding of three-helix bundle proteins.
    Islam SA, Karplus M, Weaver DL.
    J Mol Biol; 2002 Apr 19; 318(1):199-215. PubMed ID: 12054779
    [Abstract] [Full Text] [Related]

  • 16. Non-native interactions in protein folding intermediates: molecular dynamics simulations of hen lysozyme.
    Kazmirski SL, Daggett V.
    J Mol Biol; 1998 Dec 04; 284(3):793-806. PubMed ID: 9826516
    [Abstract] [Full Text] [Related]

  • 17. Folding pathway dependence on energetic frustration and interaction heterogeneity for a three-dimensional hydrophobic protein model.
    Garcia LG, Araújo AF.
    Proteins; 2006 Jan 01; 62(1):46-63. PubMed ID: 16292745
    [Abstract] [Full Text] [Related]

  • 18. Simulations of the structural and dynamical properties of denatured proteins: the "molten coil" state of bovine pancreatic trypsin inhibitor.
    Kazmirski SL, Daggett V.
    J Mol Biol; 1998 Mar 27; 277(2):487-506. PubMed ID: 9514766
    [Abstract] [Full Text] [Related]

  • 19. Folding dynamics of the Trp-cage miniprotein: evidence for a native-like intermediate from combined time-resolved vibrational spectroscopy and molecular dynamics simulations.
    Meuzelaar H, Marino KA, Huerta-Viga A, Panman MR, Smeenk LE, Kettelarij AJ, van Maarseveen JH, Timmerman P, Bolhuis PG, Woutersen S.
    J Phys Chem B; 2013 Oct 03; 117(39):11490-501. PubMed ID: 24050152
    [Abstract] [Full Text] [Related]

  • 20. Folding kinetics of a lattice protein via a forward flux sampling approach.
    Borrero EE, Escobedo FA.
    J Chem Phys; 2006 Oct 28; 125(16):164904. PubMed ID: 17092136
    [Abstract] [Full Text] [Related]

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