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Journal Abstract Search

153 related items for PubMed ID: 15340913

  • 1. Toward an atomistic model for predicting transcription-factor binding sites.
    Endres RG, Schulthess TC, Wingreen NS.
    Proteins; 2004 Nov 01; 57(2):262-8. PubMed ID: 15340913
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  • 2. Rearrangement of side-chains in a Zif268 mutant highlights the complexities of zinc finger-DNA recognition.
    Miller JC, Pabo CO.
    J Mol Biol; 2001 Oct 19; 313(2):309-15. PubMed ID: 11800559
    [Abstract] [Full Text] [Related]

  • 3. Crystal structure of the human LRH-1 DBD-DNA complex reveals Ftz-F1 domain positioning is required for receptor activity.
    Solomon IH, Hager JM, Safi R, McDonnell DP, Redinbo MR, Ortlund EA.
    J Mol Biol; 2005 Dec 16; 354(5):1091-102. PubMed ID: 16289203
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  • 4. Correlated evolutionary pressure at interacting transcription factors and DNA response elements can guide the rational engineering of DNA binding specificity.
    Raviscioni M, Gu P, Sattar M, Cooney AJ, Lichtarge O.
    J Mol Biol; 2005 Jul 15; 350(3):402-15. PubMed ID: 15946684
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  • 5. The NMR solution structure of a mutant of the Max b/HLH/LZ free of DNA: insights into the specific and reversible DNA binding mechanism of dimeric transcription factors.
    Sauvé S, Tremblay L, Lavigne P.
    J Mol Biol; 2004 Sep 17; 342(3):813-32. PubMed ID: 15342239
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  • 6. A molecular dissection of the interaction between the transcription factor Gata-1 zinc finger and DNA.
    Mott BH, Bassman J, Pikaart MJ.
    Biochem Biophys Res Commun; 2004 Apr 09; 316(3):910-7. PubMed ID: 15033488
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  • 7. ZIFIBI: Prediction of DNA binding sites for zinc finger proteins.
    Cho SY, Chung M, Park M, Park S, Lee YS.
    Biochem Biophys Res Commun; 2008 May 09; 369(3):845-8. PubMed ID: 18325330
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  • 12. Quantitative evaluation of protein-DNA interactions using an optimized knowledge-based potential.
    Liu Z, Mao F, Guo JT, Yan B, Wang P, Qu Y, Xu Y.
    Nucleic Acids Res; 2005 May 09; 33(2):546-58. PubMed ID: 15673715
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  • 16. Quantitative analysis of the transcription factor AP2 binding to DNA by atomic force microscopy.
    Nettikadan S, Tokumasu F, Takeyasu K.
    Biochem Biophys Res Commun; 1996 Sep 24; 226(3):645-9. PubMed ID: 8831670
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  • 17. Pituitary homeobox 1 (Pitx1) stimulates rat LHbeta gene expression via two functional DNA-regulatory regions.
    Jiang Q, Jeong KH, Horton CD, Halvorson LM.
    J Mol Endocrinol; 2005 Aug 24; 35(1):145-58. PubMed ID: 16087728
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  • 18. Distinct effector-binding sites enable synergistic transcriptional activation by BenM, a LysR-type regulator.
    Ezezika OC, Haddad S, Clark TJ, Neidle EL, Momany C.
    J Mol Biol; 2007 Mar 30; 367(3):616-29. PubMed ID: 17291527
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  • 19. Computational analysis and modeling of genome-scale avidity distribution of transcription factor binding sites in chip-pet experiments.
    Kuznetsov VA, Orlov YL, Wei CL, Ruan Y.
    Genome Inform; 2007 Mar 30; 19():83-94. PubMed ID: 18546507
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