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Pubmed for Handhelds

PUBMED FOR HANDHELDS

Journal Abstract Search

248 related items for PubMed ID: 15377506

  • 1. RALEE--RNA ALignment editor in Emacs.
    Griffiths-Jones S.
    Bioinformatics; 2005 Jan 15; 21(2):257-9. PubMed ID: 15377506
    [Abstract] [Full Text] [Related]

  • 2. CINEMA-MX: a modular multiple alignment editor.
    Lord PW, Selley JN, Attwood TK.
    Bioinformatics; 2002 Oct 15; 18(10):1402-3. PubMed ID: 12376388
    [Abstract] [Full Text] [Related]

  • 3. Clustal W and Clustal X version 2.0.
    Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG.
    Bioinformatics; 2007 Nov 01; 23(21):2947-8. PubMed ID: 17846036
    [Abstract] [Full Text] [Related]

  • 4. DNAAlignEditor: DNA alignment editor tool.
    Sanchez-Villeda H, Schroeder S, Flint-Garcia S, Guill KE, Yamasaki M, McMullen MD.
    BMC Bioinformatics; 2008 Mar 19; 9():154. PubMed ID: 18366684
    [Abstract] [Full Text] [Related]

  • 5. CHROMA: consensus-based colouring of multiple alignments for publication.
    Goodstadt L, Ponting CP.
    Bioinformatics; 2001 Sep 19; 17(9):845-6. PubMed ID: 11590103
    [Abstract] [Full Text] [Related]

  • 6. Sequence to Structure (S2S): display, manipulate and interconnect RNA data from sequence to structure.
    Jossinet F, Westhof E.
    Bioinformatics; 2005 Aug 01; 21(15):3320-1. PubMed ID: 15905274
    [Abstract] [Full Text] [Related]

  • 7. The Jalview Java alignment editor.
    Clamp M, Cuff J, Searle SM, Barton GJ.
    Bioinformatics; 2004 Feb 12; 20(3):426-7. PubMed ID: 14960472
    [Abstract] [Full Text] [Related]

  • 8. SEQEL: a tool for biological sequence manipulation in Emacs.
    Xu ZZ, Lu H.
    Bioinform Adv; 2021 Feb 12; 1(1):vbab019. PubMed ID: 36700085
    [Abstract] [Full Text] [Related]

  • 9. ReDiT: Repeat Discrepancy Tagger--a shotgun assembly finishing aid.
    Tammi MT, Arner E, Kindlund E, Andersson B.
    Bioinformatics; 2004 Mar 22; 20(5):803-4. PubMed ID: 14751967
    [Abstract] [Full Text] [Related]

  • 10. jPHYDIT: a JAVA-based integrated environment for molecular phylogeny of ribosomal RNA sequences.
    Jeon YS, Chung H, Park S, Hur I, Lee JH, Chun J.
    Bioinformatics; 2005 Jul 15; 21(14):3171-3. PubMed ID: 15855247
    [Abstract] [Full Text] [Related]

  • 11. Ribostral: an RNA 3D alignment analyzer and viewer based on basepair isostericities.
    Mokdad A, Leontis NB.
    Bioinformatics; 2006 Sep 01; 22(17):2168-70. PubMed ID: 16820430
    [Abstract] [Full Text] [Related]

  • 12. Semiautomated improvement of RNA alignments.
    Andersen ES, Lind-Thomsen A, Knudsen B, Kristensen SE, Havgaard JH, Torarinsson E, Larsen N, Zwieb C, Sestoft P, Kjems J, Gorodkin J.
    RNA; 2007 Nov 01; 13(11):1850-9. PubMed ID: 17804647
    [Abstract] [Full Text] [Related]

  • 13. TargetFinder: a software for antisense oligonucleotide target site selection based on MAST and secondary structures of target mRNA.
    Bo X, Wang S.
    Bioinformatics; 2005 Apr 15; 21(8):1401-2. PubMed ID: 15598838
    [Abstract] [Full Text] [Related]

  • 14. JAE: Jemboss Alignment Editor.
    Carver TJ, Mullan LJ.
    Appl Bioinformatics; 2005 Apr 15; 4(2):151-4. PubMed ID: 16128618
    [Abstract] [Full Text] [Related]

  • 15. ConStruct: Improved construction of RNA consensus structures.
    Wilm A, Linnenbrink K, Steger G.
    BMC Bioinformatics; 2008 Apr 28; 9():219. PubMed ID: 18442401
    [Abstract] [Full Text] [Related]

  • 16. MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons.
    Siebert S, Backofen R.
    Bioinformatics; 2005 Aug 15; 21(16):3352-9. PubMed ID: 15972285
    [Abstract] [Full Text] [Related]

  • 17. DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.
    Ferrè F, Ponty Y, Lorenz WA, Clote P.
    Nucleic Acids Res; 2007 Jul 15; 35(Web Server issue):W659-68. PubMed ID: 17567620
    [Abstract] [Full Text] [Related]

  • 18. Sfixem--graphical sequence feature display in Java.
    Chalk AM, Wennerberg M, Sonnhammer EL.
    Bioinformatics; 2004 Oct 12; 20(15):2488-90. PubMed ID: 15087316
    [Abstract] [Full Text] [Related]

  • 19. Infernal 1.1: 100-fold faster RNA homology searches.
    Nawrocki EP, Eddy SR.
    Bioinformatics; 2013 Nov 15; 29(22):2933-5. PubMed ID: 24008419
    [Abstract] [Full Text] [Related]

  • 20. Infernal 1.0: inference of RNA alignments.
    Nawrocki EP, Kolbe DL, Eddy SR.
    Bioinformatics; 2009 May 15; 25(10):1335-7. PubMed ID: 19307242
    [Abstract] [Full Text] [Related]

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