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Journal Abstract Search

161 related items for PubMed ID: 15476257

  • 21. Beyond the Twilight Zone: automated prediction of structural properties of proteins by recursive neural networks and remote homology information.
    Mooney C, Pollastri G.
    Proteins; 2009 Oct; 77(1):181-90. PubMed ID: 19422056
    [Abstract] [Full Text] [Related]

  • 22. Prediction of protein structure by emphasizing local side-chain/backbone interactions in ensembles of turn fragments.
    Fang Q, Shortle D.
    Proteins; 2003 Oct; 53 Suppl 6():486-90. PubMed ID: 14579337
    [Abstract] [Full Text] [Related]

  • 23. A simple physical model for the prediction and design of protein-DNA interactions.
    Havranek JJ, Duarte CM, Baker D.
    J Mol Biol; 2004 Nov 12; 344(1):59-70. PubMed ID: 15504402
    [Abstract] [Full Text] [Related]

  • 24. Enhanced sampling near the native conformation using statistical potentials for local side-chain and backbone interactions.
    Fang Q, Shortle D.
    Proteins; 2005 Jul 01; 60(1):97-102. PubMed ID: 15852306
    [Abstract] [Full Text] [Related]

  • 25. Statistical potential-based amino acid similarity matrices for aligning distantly related protein sequences.
    Tan YH, Huang H, Kihara D.
    Proteins; 2006 Aug 15; 64(3):587-600. PubMed ID: 16799934
    [Abstract] [Full Text] [Related]

  • 26. Statistically significant dependence of the Xaa-Pro peptide bond conformation on secondary structure and amino acid sequence.
    Pahlke D, Freund C, Leitner D, Labudde D.
    BMC Struct Biol; 2005 Apr 01; 5():8. PubMed ID: 15804350
    [Abstract] [Full Text] [Related]

  • 27. Interresidue contacts in proteins and protein-protein interfaces and their use in characterizing the homodimeric interface.
    Saha RP, Bahadur RP, Chakrabarti P.
    J Proteome Res; 2005 Apr 01; 4(5):1600-9. PubMed ID: 16212412
    [Abstract] [Full Text] [Related]

  • 28. Recognition of coarse-grained protein tertiary structure.
    Lezon T, Banavar JR, Maritan A.
    Proteins; 2004 May 15; 55(3):536-47. PubMed ID: 15103618
    [Abstract] [Full Text] [Related]

  • 29. Protein-RNA interactions: structural analysis and functional classes.
    Ellis JJ, Broom M, Jones S.
    Proteins; 2007 Mar 01; 66(4):903-11. PubMed ID: 17186525
    [Abstract] [Full Text] [Related]

  • 30. A consistent set of statistical potentials for quantifying local side-chain and backbone interactions.
    Fang Q, Shortle D.
    Proteins; 2005 Jul 01; 60(1):90-6. PubMed ID: 15852305
    [Abstract] [Full Text] [Related]

  • 31. Information-theoretic dissection of pairwise contact potentials.
    Cline MS, Karplus K, Lathrop RH, Smith TF, Rogers RG, Haussler D.
    Proteins; 2002 Oct 01; 49(1):7-14. PubMed ID: 12211011
    [Abstract] [Full Text] [Related]

  • 32. A method for protein accessibility prediction based on residue types and conformational states.
    Zarei R, Arab S, Sadeghi M.
    Comput Biol Chem; 2007 Oct 01; 31(5-6):384-8. PubMed ID: 17888743
    [Abstract] [Full Text] [Related]

  • 33. Multiple contact network is a key determinant to protein folding rates.
    Gromiha MM.
    J Chem Inf Model; 2009 Apr 01; 49(4):1130-5. PubMed ID: 19338373
    [Abstract] [Full Text] [Related]

  • 34. Predicting functionally important residues from sequence conservation.
    Capra JA, Singh M.
    Bioinformatics; 2007 Aug 01; 23(15):1875-82. PubMed ID: 17519246
    [Abstract] [Full Text] [Related]

  • 35. Protein design with L- and D-alpha-amino acid structures as the alphabet.
    Durani S.
    Acc Chem Res; 2008 Oct 01; 41(10):1301-8. PubMed ID: 18642934
    [Abstract] [Full Text] [Related]

  • 36. [Analysis of the spatial structure of proteins in terms of residue-residue contacts. II. Contact affinity].
    Rodionov MA, Gurevich AV, Galaktionov SG.
    Mol Biol (Mosk); 1993 Oct 01; 27(2):363-70. PubMed ID: 8487768
    [Abstract] [Full Text] [Related]

  • 37. Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space.
    Fromer M, Yanover C.
    Proteins; 2009 May 15; 75(3):682-705. PubMed ID: 19003998
    [Abstract] [Full Text] [Related]

  • 38. Sequence-based protein structure prediction using a reduced state-space hidden Markov model.
    Lampros C, Costas Papaloukas, Exarchos TP, Yorgos Goletsis, Fotiadis DI.
    Comput Biol Med; 2007 Sep 15; 37(9):1211-24. PubMed ID: 17161834
    [Abstract] [Full Text] [Related]

  • 39. Potential implications of availability of short amino acid sequences in proteins: an old and new approach to protein decoding and design.
    Otaki JM, Gotoh T, Yamamoto H.
    Biotechnol Annu Rev; 2008 Sep 15; 14():109-41. PubMed ID: 18606361
    [Abstract] [Full Text] [Related]

  • 40. Accuracy of sequence alignment and fold assessment using reduced amino acid alphabets.
    Melo F, Marti-Renom MA.
    Proteins; 2006 Jun 01; 63(4):986-95. PubMed ID: 16506243
    [Abstract] [Full Text] [Related]

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