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Journal Abstract Search

100 related items for PubMed ID: 15586398

  • 1. A quantum chemical method for rapid optimization of protein structures.
    Wada M, Sakurai M.
    J Comput Chem; 2005 Jan 30; 26(2):160-8. PubMed ID: 15586398
    [Abstract] [Full Text] [Related]

  • 2. The elastic net algorithm and protein structure prediction.
    Ball KD, Erman B, Dill KA.
    J Comput Chem; 2002 Jan 15; 23(1):77-83. PubMed ID: 11913391
    [Abstract] [Full Text] [Related]

  • 3. Fast and accurate side-chain topology and energy refinement (FASTER) as a new method for protein structure optimization.
    Desmet J, Spriet J, Lasters I.
    Proteins; 2002 Jul 01; 48(1):31-43. PubMed ID: 12012335
    [Abstract] [Full Text] [Related]

  • 4. Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space.
    Fromer M, Yanover C.
    Proteins; 2009 May 15; 75(3):682-705. PubMed ID: 19003998
    [Abstract] [Full Text] [Related]

  • 5. Statistical geometry based prediction of nonsynonymous SNP functional effects using random forest and neuro-fuzzy classifiers.
    Barenboim M, Masso M, Vaisman II, Jamison DC.
    Proteins; 2008 Jun 15; 71(4):1930-9. PubMed ID: 18186470
    [Abstract] [Full Text] [Related]

  • 6. A novel force field parameter optimization method based on LSSVR for ECEPP.
    Liu Y, Tao L, Lu J, Xu S, Ma Q, Duan Q.
    FEBS Lett; 2011 Mar 23; 585(6):888-92. PubMed ID: 21349275
    [Abstract] [Full Text] [Related]

  • 7. Calculating absorption shifts for retinal proteins: computational challenges.
    Wanko M, Hoffmann M, Strodel P, Koslowski A, Thiel W, Neese F, Frauenheim T, Elstner M.
    J Phys Chem B; 2005 Mar 03; 109(8):3606-15. PubMed ID: 16851399
    [Abstract] [Full Text] [Related]

  • 8. Estimating quality of template-based protein models by alignment stability.
    Chen H, Kihara D.
    Proteins; 2008 May 15; 71(3):1255-74. PubMed ID: 18041762
    [Abstract] [Full Text] [Related]

  • 9. Exact rotamer optimization for protein design.
    Gordon DB, Hom GK, Mayo SL, Pierce NA.
    J Comput Chem; 2003 Jan 30; 24(2):232-43. PubMed ID: 12497602
    [Abstract] [Full Text] [Related]

  • 10. Another look at the conditions for the extraction of protein knowledge-based potentials.
    Betancourt MR.
    Proteins; 2009 Jul 30; 76(1):72-85. PubMed ID: 19089977
    [Abstract] [Full Text] [Related]

  • 11. Sequence-based protein structure prediction using a reduced state-space hidden Markov model.
    Lampros C, Costas Papaloukas, Exarchos TP, Yorgos Goletsis, Fotiadis DI.
    Comput Biol Med; 2007 Sep 30; 37(9):1211-24. PubMed ID: 17161834
    [Abstract] [Full Text] [Related]

  • 12. Improved greedy algorithm for protein structure reconstruction.
    Tuffery P, Guyon F, Derreumaux P.
    J Comput Chem; 2005 Apr 15; 26(5):506-13. PubMed ID: 15693017
    [Abstract] [Full Text] [Related]

  • 13. CAALIGN: a program for pairwise and multiple protein-structure alignment.
    Oldfield TJ.
    Acta Crystallogr D Biol Crystallogr; 2007 Apr 15; 63(Pt 4):514-25. PubMed ID: 17372357
    [Abstract] [Full Text] [Related]

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  • 17. High accuracy template based modeling by global optimization.
    Joo K, Lee J, Lee S, Seo JH, Lee SJ, Lee J.
    Proteins; 2007 Apr 15; 69 Suppl 8():83-9. PubMed ID: 17894332
    [Abstract] [Full Text] [Related]

  • 18. Comprehensive identification of "druggable" protein ligand binding sites.
    An J, Totrov M, Abagyan R.
    Genome Inform; 2004 Apr 15; 15(2):31-41. PubMed ID: 15706489
    [Abstract] [Full Text] [Related]

  • 19. A correlation-based method for the enhancement of scoring functions on funnel-shaped energy landscapes.
    Stumpff-Kane AW, Feig M.
    Proteins; 2006 Apr 01; 63(1):155-64. PubMed ID: 16397892
    [Abstract] [Full Text] [Related]

  • 20. Routes are trees: the parsing perspective on protein folding.
    Hockenmaier J, Joshi AK, Dill KA.
    Proteins; 2007 Jan 01; 66(1):1-15. PubMed ID: 17063473
    [Abstract] [Full Text] [Related]

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