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Journal Abstract Search

349 related items for PubMed ID: 15588106

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  • 2. Effects of base substitutions in an RNA hairpin from molecular dynamics and free energy simulations.
    Sarzynska J, Nilsson L, Kulinski T.
    Biophys J; 2003 Dec; 85(6):3445-59. PubMed ID: 14645041
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  • 4. A network of heterogeneous hydrogen bonds in GNRA tetraloops.
    Jucker FM, Heus HA, Yip PF, Moors EH, Pardi A.
    J Mol Biol; 1996 Dec 20; 264(5):968-80. PubMed ID: 9000624
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  • 6. Experimental and computational studies of the G[UUCG]C RNA tetraloop.
    Williams DJ, Hall KB.
    J Mol Biol; 2000 Apr 14; 297(5):1045-61. PubMed ID: 10764572
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  • 9. Sequence dependence of the stability of RNA hairpin molecules with six nucleotide loops.
    Vecenie CJ, Morrow CV, Zyra A, Serra MJ.
    Biochemistry; 2006 Feb 07; 45(5):1400-7. PubMed ID: 16445282
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  • 12. A DNA hairpin with a single residue loop closed by a strongly distorted Watson-Crick G x C base-pair.
    El Amri C, Mauffret O, Monnot M, Tevanian G, Lescot E, Porumb H, Fermandjian S.
    J Mol Biol; 1999 Nov 26; 294(2):427-42. PubMed ID: 10610769
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  • 13. Model for an RNA tertiary interaction from the structure of an intermolecular complex between a GAAA tetraloop and an RNA helix.
    Pley HW, Flaherty KM, McKay DB.
    Nature; 1994 Nov 03; 372(6501):111-3. PubMed ID: 7526219
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  • 14. Evidence that folding of an RNA tetraloop hairpin is less cooperative than its DNA counterpart.
    Moody EM, Feerrar JC, Bevilacqua PC.
    Biochemistry; 2004 Jun 29; 43(25):7992-8. PubMed ID: 15209494
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  • 15. Effect of GCAA stabilizing loops on three- and four-way intramolecular junctions.
    Carr CE, Marky LA.
    Phys Chem Chem Phys; 2018 Feb 14; 20(7):5046-5056. PubMed ID: 29388988
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  • 19. Contribution of the closing base pair to exceptional stability in RNA tetraloops: roles for molecular mimicry and electrostatic factors.
    Blose JM, Proctor DJ, Veeraraghavan N, Misra VK, Bevilacqua PC.
    J Am Chem Soc; 2009 Jun 24; 131(24):8474-84. PubMed ID: 19476351
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  • 20. Structural dynamics of the box C/D RNA kink-turn and its complex with proteins: the role of the A-minor 0 interaction, long-residency water bridges, and structural ion-binding sites revealed by molecular simulations.
    Spacková N, Réblová K, Sponer J.
    J Phys Chem B; 2010 Aug 19; 114(32):10581-93. PubMed ID: 20701388
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