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Journal Abstract Search

475 related items for PubMed ID: 15651050

  • 21.
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  • 22. A solvated ligand rotamer approach and its application in computational protein design.
    Huang X, Yang J, Zhu Y.
    J Mol Model; 2013 Mar; 19(3):1355-67. PubMed ID: 23192355
    [Abstract] [Full Text] [Related]

  • 23. Heat capacity effects of water molecules and ions at a protein-DNA interface.
    Bergqvist S, Williams MA, O'Brien R, Ladbury JE.
    J Mol Biol; 2004 Feb 27; 336(4):829-42. PubMed ID: 15095863
    [Abstract] [Full Text] [Related]

  • 24. Modeling side-chains using molecular dynamics improve recognition of binding region in CAPRI targets.
    Camacho CJ.
    Proteins; 2005 Aug 01; 60(2):245-51. PubMed ID: 15981253
    [Abstract] [Full Text] [Related]

  • 25. Improving CAPRI predictions: optimized desolvation for rigid-body docking.
    Fernández-Recio J, Abagyan R, Totrov M.
    Proteins; 2005 Aug 01; 60(2):308-13. PubMed ID: 15981266
    [Abstract] [Full Text] [Related]

  • 26. Statistical analysis and prediction of protein-protein interfaces.
    Bordner AJ, Abagyan R.
    Proteins; 2005 Aug 15; 60(3):353-66. PubMed ID: 15906321
    [Abstract] [Full Text] [Related]

  • 27. Predicting peptide binding to MHC pockets via molecular modeling, implicit solvation, and global optimization.
    Schafroth HD, Floudas CA.
    Proteins; 2004 Feb 15; 54(3):534-56. PubMed ID: 14748001
    [Abstract] [Full Text] [Related]

  • 28. Mapping the energetics of water-protein and water-ligand interactions with the "natural" HINT forcefield: predictive tools for characterizing the roles of water in biomolecules.
    Amadasi A, Spyrakis F, Cozzini P, Abraham DJ, Kellogg GE, Mozzarelli A.
    J Mol Biol; 2006 Apr 21; 358(1):289-309. PubMed ID: 16497327
    [Abstract] [Full Text] [Related]

  • 29.
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  • 30. A physical reference state unifies the structure-derived potential of mean force for protein folding and binding.
    Liu S, Zhang C, Zhou H, Zhou Y.
    Proteins; 2004 Jul 01; 56(1):93-101. PubMed ID: 15162489
    [Abstract] [Full Text] [Related]

  • 31. Modeling of the water network at protein-RNA interfaces.
    Li Y, Sutch BT, Bui HH, Gallaher TK, Haworth IS.
    J Chem Inf Model; 2011 Jun 27; 51(6):1347-52. PubMed ID: 21612274
    [Abstract] [Full Text] [Related]

  • 32. Protein-protein docking using 3D-Dock in rounds 3, 4, and 5 of CAPRI.
    Carter P, Lesk VI, Islam SA, Sternberg MJ.
    Proteins; 2005 Aug 01; 60(2):281-8. PubMed ID: 15981271
    [Abstract] [Full Text] [Related]

  • 33. Structure of a mutant T=1 capsid of Sesbania mosaic virus: role of water molecules in capsid architecture and integrity.
    Sangita V, Satheshkumar PS, Savithri HS, Murthy MR.
    Acta Crystallogr D Biol Crystallogr; 2005 Oct 01; 61(Pt 10):1406-12. PubMed ID: 16204894
    [Abstract] [Full Text] [Related]

  • 34. Novel modulation factor quantifies the role of water molecules in protein interactions.
    Bueno M, Temiz NA, Camacho CJ.
    Proteins; 2010 Nov 15; 78(15):3226-34. PubMed ID: 20665475
    [Abstract] [Full Text] [Related]

  • 35.
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  • 36.
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  • 37. Protein-protein docking: progress in CAPRI rounds 6-12 using a combination of methods: the introduction of steered solvated molecular dynamics.
    Heifetz A, Pal S, Smith GR.
    Proteins; 2007 Dec 01; 69(4):816-22. PubMed ID: 17803214
    [Abstract] [Full Text] [Related]

  • 38.
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  • 39.
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  • 40.
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