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Journal Abstract Search

182 related items for PubMed ID: 15689509

  • 1. Identification of the ligand binding sites on the molecular surface of proteins.
    Kinoshita K, Nakamura H.
    Protein Sci; 2005 Mar; 14(3):711-8. PubMed ID: 15689509
    [Abstract] [Full Text] [Related]

  • 2. PDB-Ligand: a ligand database based on PDB for the automated and customized classification of ligand-binding structures.
    Shin JM, Cho DH.
    Nucleic Acids Res; 2005 Jan 01; 33(Database issue):D238-41. PubMed ID: 15608186
    [Abstract] [Full Text] [Related]

  • 3. sc-PDB: an annotated database of druggable binding sites from the Protein Data Bank.
    Kellenberger E, Muller P, Schalon C, Bret G, Foata N, Rognan D.
    J Chem Inf Model; 2006 Jan 01; 46(2):717-27. PubMed ID: 16563002
    [Abstract] [Full Text] [Related]

  • 4. Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites.
    Laurie AT, Jackson RM.
    Bioinformatics; 2005 May 01; 21(9):1908-16. PubMed ID: 15701681
    [Abstract] [Full Text] [Related]

  • 5. A searchable database for comparing protein-ligand binding sites for the analysis of structure-function relationships.
    Gold ND, Jackson RM.
    J Chem Inf Model; 2006 May 01; 46(2):736-42. PubMed ID: 16563004
    [Abstract] [Full Text] [Related]

  • 6. eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shape.
    Kinoshita K, Murakami Y, Nakamura H.
    Nucleic Acids Res; 2007 Jul 01; 35(Web Server issue):W398-402. PubMed ID: 17567616
    [Abstract] [Full Text] [Related]

  • 7. SitesBase: a database for structure-based protein-ligand binding site comparisons.
    Gold ND, Jackson RM.
    Nucleic Acids Res; 2006 Jan 01; 34(Database issue):D231-4. PubMed ID: 16381853
    [Abstract] [Full Text] [Related]

  • 8. Similarity networks of protein binding sites.
    Zhang Z, Grigorov MG.
    Proteins; 2006 Feb 01; 62(2):470-8. PubMed ID: 16299776
    [Abstract] [Full Text] [Related]

  • 9. Domain-based small molecule binding site annotation.
    Snyder KA, Feldman HJ, Dumontier M, Salama JJ, Hogue CW.
    BMC Bioinformatics; 2006 Mar 17; 7():152. PubMed ID: 16545112
    [Abstract] [Full Text] [Related]

  • 10. Binding response: a descriptor for selecting ligand binding site on protein surfaces.
    Zhong S, MacKerell AD.
    J Chem Inf Model; 2007 Mar 17; 47(6):2303-15. PubMed ID: 17900106
    [Abstract] [Full Text] [Related]

  • 11. Binding similarity network of ligand.
    Park K, Kim D.
    Proteins; 2008 May 01; 71(2):960-71. PubMed ID: 18004762
    [Abstract] [Full Text] [Related]

  • 12. An empirical approach for detecting nucleotide-binding sites on proteins.
    Saito M, Go M, Shirai T.
    Protein Eng Des Sel; 2006 Feb 01; 19(2):67-75. PubMed ID: 16403825
    [Abstract] [Full Text] [Related]

  • 13. Predicting small ligand binding sites in proteins using backbone structure.
    Bordner AJ.
    Bioinformatics; 2008 Dec 15; 24(24):2865-71. PubMed ID: 18940825
    [Abstract] [Full Text] [Related]

  • 14. Alignment-free ultra-high-throughput comparison of druggable protein-ligand binding sites.
    Weill N, Rognan D.
    J Chem Inf Model; 2010 Jan 15; 50(1):123-35. PubMed ID: 20058856
    [Abstract] [Full Text] [Related]

  • 15. Comparison of protein active site structures for functional annotation of proteins and drug design.
    Powers R, Copeland JC, Germer K, Mercier KA, Ramanathan V, Revesz P.
    Proteins; 2006 Oct 01; 65(1):124-35. PubMed ID: 16862592
    [Abstract] [Full Text] [Related]

  • 16. Search for glucose/galactose-binding proteins in newly discovered protein sequences using molecular modeling techniques and structural analysis.
    Patra M, Mandal C.
    Glycobiology; 2006 Oct 01; 16(10):959-68. PubMed ID: 16835461
    [Abstract] [Full Text] [Related]

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  • 18. Comprehensive identification of "druggable" protein ligand binding sites.
    An J, Totrov M, Abagyan R.
    Genome Inform; 2004 Oct 01; 15(2):31-41. PubMed ID: 15706489
    [Abstract] [Full Text] [Related]

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  • 20. Protein structure databases with new web services for structural biology and biomedical research.
    Standley DM, Kinjo AR, Kinoshita K, Nakamura H.
    Brief Bioinform; 2008 Jul 01; 9(4):276-85. PubMed ID: 18430752
    [Abstract] [Full Text] [Related]

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