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Journal Abstract Search

299 related items for PubMed ID: 15713734

  • 1. FastContact: rapid estimate of contact and binding free energies.
    Camacho CJ, Zhang C.
    Bioinformatics; 2005 May 15; 21(10):2534-6. PubMed ID: 15713734
    [Abstract] [Full Text] [Related]

  • 2. FastContact: a free energy scoring tool for protein-protein complex structures.
    Champ PC, Camacho CJ.
    Nucleic Acids Res; 2007 Jul 15; 35(Web Server issue):W556-60. PubMed ID: 17537824
    [Abstract] [Full Text] [Related]

  • 3. Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons.
    Morris RJ, Najmanovich RJ, Kahraman A, Thornton JM.
    Bioinformatics; 2005 May 15; 21(10):2347-55. PubMed ID: 15728116
    [Abstract] [Full Text] [Related]

  • 4. STING Contacts: a web-based application for identification and analysis of amino acid contacts within protein structure and across protein interfaces.
    Mancini AL, Higa RH, Oliveira A, Dominiquini F, Kuser PR, Yamagishi ME, Togawa RC, Neshich G.
    Bioinformatics; 2004 Sep 01; 20(13):2145-7. PubMed ID: 15073001
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  • 6. BDT: an easy-to-use front-end application for automation of massive docking tasks and complex docking strategies with AutoDock.
    Vaqué M, Arola A, Aliagas C, Pujadas G.
    Bioinformatics; 2006 Jul 15; 22(14):1803-4. PubMed ID: 16720587
    [Abstract] [Full Text] [Related]

  • 7. Intramolecular surface contacts contain information about protein-protein interface regions.
    de Vries SJ, Bonvin AM.
    Bioinformatics; 2006 Sep 01; 22(17):2094-8. PubMed ID: 16766554
    [Abstract] [Full Text] [Related]

  • 8. SHARP2: protein-protein interaction predictions using patch analysis.
    Murakami Y, Jones S.
    Bioinformatics; 2006 Jul 15; 22(14):1794-5. PubMed ID: 16672257
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  • 9. M-ZDOCK: a grid-based approach for Cn symmetric multimer docking.
    Pierce B, Tong W, Weng Z.
    Bioinformatics; 2005 Apr 15; 21(8):1472-8. PubMed ID: 15613396
    [Abstract] [Full Text] [Related]

  • 10. FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps.
    Vassura M, Margara L, Di Lena P, Medri F, Fariselli P, Casadio R.
    Bioinformatics; 2008 May 15; 24(10):1313-5. PubMed ID: 18381401
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  • 13. sGAL: a computational method for finding surface exposed sites in proteins suitable for Cys-mediated cross-linking.
    Woolley GA, Lee ES, Zhang F.
    Bioinformatics; 2006 Dec 15; 22(24):3101-2. PubMed ID: 17046976
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  • 14. PROTMAP2D: visualization, comparison and analysis of 2D maps of protein structure.
    Pietal MJ, Tuszynska I, Bujnicki JM.
    Bioinformatics; 2007 Jun 01; 23(11):1429-30. PubMed ID: 17400727
    [Abstract] [Full Text] [Related]

  • 15. A simple shape characteristic of protein-protein recognition.
    Nicola G, Vakser IA.
    Bioinformatics; 2007 Apr 01; 23(7):789-92. PubMed ID: 17267427
    [Abstract] [Full Text] [Related]

  • 16. Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites.
    Laurie AT, Jackson RM.
    Bioinformatics; 2005 May 01; 21(9):1908-16. PubMed ID: 15701681
    [Abstract] [Full Text] [Related]

  • 17. Efficient recognition of folds in protein 3D structures by the improved PRIDE algorithm.
    Gáspári Z, Vlahovicek K, Pongor S.
    Bioinformatics; 2005 Aug 01; 21(15):3322-3. PubMed ID: 15914542
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  • 19. PSIbase: a database of Protein Structural Interactome map (PSIMAP).
    Gong S, Yoon G, Jang I, Bolser D, Dafas P, Schroeder M, Choi H, Cho Y, Han K, Lee S, Choi H, Lappe M, Holm L, Kim S, Oh D, Bhak J.
    Bioinformatics; 2005 May 15; 21(10):2541-3. PubMed ID: 15749693
    [Abstract] [Full Text] [Related]

  • 20. Properties of contact matrices induced by pairwise interactions in proteins.
    Miyazawa S, Kinjo AR.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2008 May 15; 77(5 Pt 1):051910. PubMed ID: 18643105
    [Abstract] [Full Text] [Related]

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