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Journal Abstract Search

142 related items for PubMed ID: 15716088

  • 1. Generality of the structurally constrained protein evolution model: assessment on representatives of the four main fold classes.
    Parisi G, Echave J.
    Gene; 2005 Jan 17; 345(1):45-53. PubMed ID: 15716088
    [Abstract] [Full Text] [Related]

  • 2. The structurally constrained protein evolution model accounts for sequence patterns of the LbetaH superfamily.
    Parisi G, Echave J.
    BMC Evol Biol; 2004 Oct 22; 4():41. PubMed ID: 15500694
    [Abstract] [Full Text] [Related]

  • 3. Quaternary structure constraints on evolutionary sequence divergence.
    Fornasari MS, Parisi G, Echave J.
    Mol Biol Evol; 2007 Feb 22; 24(2):349-51. PubMed ID: 17124181
    [Abstract] [Full Text] [Related]

  • 4. A protein evolution model with independent sites that reproduces site-specific amino acid distributions from the Protein Data Bank.
    Bastolla U, Porto M, Roman HE, Vendruscolo M.
    BMC Evol Biol; 2006 May 31; 6():43. PubMed ID: 16737532
    [Abstract] [Full Text] [Related]

  • 5. Looking at structure, stability, and evolution of proteins through the principal eigenvector of contact matrices and hydrophobicity profiles.
    Bastolla U, Porto M, Roman HE, Vendruscolo M.
    Gene; 2005 Mar 14; 347(2):219-30. PubMed ID: 15777696
    [Abstract] [Full Text] [Related]

  • 6. Connectivity of neutral networks, overdispersion, and structural conservation in protein evolution.
    Bastolla U, Porto M, Eduardo Roman MH, Vendruscolo MH.
    J Mol Evol; 2003 Mar 14; 56(3):243-54. PubMed ID: 12612828
    [Abstract] [Full Text] [Related]

  • 7. Testing for covarion-like evolution in protein sequences.
    Wang HC, Spencer M, Susko E, Roger AJ.
    Mol Biol Evol; 2007 Jan 14; 24(1):294-305. PubMed ID: 17056642
    [Abstract] [Full Text] [Related]

  • 8. Insights from modeling protein evolution with context-dependent mutation and asymmetric amino acid selection.
    Saunders CT, Green P.
    Mol Biol Evol; 2007 Dec 14; 24(12):2632-47. PubMed ID: 17906001
    [Abstract] [Full Text] [Related]

  • 9. Structural constraints and emergence of sequence patterns in protein evolution.
    Parisi G, Echave J.
    Mol Biol Evol; 2001 May 14; 18(5):750-6. PubMed ID: 11319259
    [Abstract] [Full Text] [Related]

  • 10. Assessment of the probabilities for evolutionary structural changes in protein folds.
    Viksna J, Gilbert D.
    Bioinformatics; 2007 Apr 01; 23(7):832-41. PubMed ID: 17282999
    [Abstract] [Full Text] [Related]

  • 11. Assessing site-interdependent phylogenetic models of sequence evolution.
    Rodrigue N, Philippe H, Lartillot N.
    Mol Biol Evol; 2006 Sep 01; 23(9):1762-75. PubMed ID: 16787998
    [Abstract] [Full Text] [Related]

  • 12. Effective connectivity profile: a structural representation that evidences the relationship between protein structures and sequences.
    Bastolla U, Ortíz AR, Porto M, Teichert F.
    Proteins; 2008 Dec 01; 73(4):872-88. PubMed ID: 18536008
    [Abstract] [Full Text] [Related]

  • 13. Maximum-Likelihood Phylogenetic Inference with Selection on Protein Folding Stability.
    Arenas M, Sánchez-Cobos A, Bastolla U.
    Mol Biol Evol; 2015 Aug 01; 32(8):2195-207. PubMed ID: 25837579
    [Abstract] [Full Text] [Related]

  • 14. Evolution of structure in gamma-class carbonic anhydrase and structurally related proteins.
    Fu X, Yu LJ, Mao-Teng L, Wei L, Wu C, Yun-Feng M.
    Mol Phylogenet Evol; 2008 Apr 01; 47(1):211-20. PubMed ID: 18289884
    [Abstract] [Full Text] [Related]

  • 15. Modeling protein evolution with several amino acid replacement matrices depending on site rates.
    Le SQ, Dang CC, Gascuel O.
    Mol Biol Evol; 2012 Oct 01; 29(10):2921-36. PubMed ID: 22491036
    [Abstract] [Full Text] [Related]

  • 16. An empirical codon model for protein sequence evolution.
    Kosiol C, Holmes I, Goldman N.
    Mol Biol Evol; 2007 Jul 01; 24(7):1464-79. PubMed ID: 17400572
    [Abstract] [Full Text] [Related]

  • 17. A new formulation of protein evolutionary models that account for structural constraints.
    Bordner AJ, Mittelmann HD.
    Mol Biol Evol; 2014 Mar 01; 31(3):736-49. PubMed ID: 24307688
    [Abstract] [Full Text] [Related]

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  • 20. Neutral evolution of model proteins: diffusion in sequence space and overdispersion.
    Bastolla U, Roman HE, Vendruscolo M.
    J Theor Biol; 1999 Sep 07; 200(1):49-64. PubMed ID: 10479539
    [Abstract] [Full Text] [Related]

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