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213 related items for PubMed ID: 15723528

  • 1. Solution structure of an RNA internal loop with three consecutive sheared GA pairs.
    Chen G, Znosko BM, Kennedy SD, Krugh TR, Turner DH.
    Biochemistry; 2005 Mar 01; 44(8):2845-56. PubMed ID: 15723528
    [Abstract] [Full Text] [Related]

  • 2. Sequence dependence of the stability of RNA hairpin molecules with six nucleotide loops.
    Vecenie CJ, Morrow CV, Zyra A, Serra MJ.
    Biochemistry; 2006 Feb 07; 45(5):1400-7. PubMed ID: 16445282
    [Abstract] [Full Text] [Related]

  • 3. G.A and U.U mismatches can stabilize RNA internal loops of three nucleotides.
    Schroeder S, Kim J, Turner DH.
    Biochemistry; 1996 Dec 17; 35(50):16105-9. PubMed ID: 8973181
    [Abstract] [Full Text] [Related]

  • 4. Stability of RNA hairpins closed by wobble base pairs.
    Giese MR, Betschart K, Dale T, Riley CK, Rowan C, Sprouse KJ, Serra MJ.
    Biochemistry; 1998 Jan 27; 37(4):1094-100. PubMed ID: 9454601
    [Abstract] [Full Text] [Related]

  • 5. Factors affecting thermodynamic stabilities of RNA 3 x 3 internal loops.
    Chen G, Znosko BM, Jiao X, Turner DH.
    Biochemistry; 2004 Oct 12; 43(40):12865-76. PubMed ID: 15461459
    [Abstract] [Full Text] [Related]

  • 6. The detailed structure of tandem G.A mismatched base-pair motifs in RNA duplexes is context dependent.
    Heus HA, Wijmenga SS, Hoppe H, Hilbers CW.
    J Mol Biol; 1997 Aug 08; 271(1):147-58. PubMed ID: 9300061
    [Abstract] [Full Text] [Related]

  • 7. The energetics of small internal loops in RNA.
    Schroeder SJ, Burkard ME, Turner DH.
    Biopolymers; 1997 Aug 08; 52(4):157-67. PubMed ID: 11295748
    [Abstract] [Full Text] [Related]

  • 8. Thermodynamics of unpaired terminal nucleotides on short RNA helixes correlates with stacking at helix termini in larger RNAs.
    Burkard ME, Kierzek R, Turner DH.
    J Mol Biol; 1999 Jul 30; 290(5):967-82. PubMed ID: 10438596
    [Abstract] [Full Text] [Related]

  • 9. Nuclear magnetic resonance spectroscopy and molecular modeling reveal that different hydrogen bonding patterns are possible for G.U pairs: one hydrogen bond for each G.U pair in r(GGCGUGCC)(2) and two for each G.U pair in r(GAGUGCUC)(2).
    Chen X, McDowell JA, Kierzek R, Krugh TR, Turner DH.
    Biochemistry; 2000 Aug 01; 39(30):8970-82. PubMed ID: 10913310
    [Abstract] [Full Text] [Related]

  • 10. Solution structure of a DNA double helix incorporating four consecutive non-Watson-Crick base-pairs.
    Chou SH, Chin KH.
    J Mol Biol; 2001 Sep 28; 312(4):769-81. PubMed ID: 11575931
    [Abstract] [Full Text] [Related]

  • 11. Evidence that folding of an RNA tetraloop hairpin is less cooperative than its DNA counterpart.
    Moody EM, Feerrar JC, Bevilacqua PC.
    Biochemistry; 2004 Jun 29; 43(25):7992-8. PubMed ID: 15209494
    [Abstract] [Full Text] [Related]

  • 12. An alternating sheared AA pair and elements of stability for a single sheared purine-purine pair flanked by sheared GA pairs in RNA.
    Chen G, Kennedy SD, Qiao J, Krugh TR, Turner DH.
    Biochemistry; 2006 Jun 06; 45(22):6889-903. PubMed ID: 16734425
    [Abstract] [Full Text] [Related]

  • 13. Stability of RNA hairpin loops closed by AU base pairs.
    Vecenie CJ, Serra MJ.
    Biochemistry; 2004 Sep 21; 43(37):11813-7. PubMed ID: 15362866
    [Abstract] [Full Text] [Related]

  • 14. Thermodynamic stability and structural features of the J4/5 loop in a Pneumocystis carinii group I intron.
    Schroeder SJ, Fountain MA, Kennedy SD, Lukavsky PJ, Puglisi JD, Krugh TR, Turner DH.
    Biochemistry; 2003 Dec 09; 42(48):14184-96. PubMed ID: 14640686
    [Abstract] [Full Text] [Related]

  • 15. Trans Hoogsteen/sugar edge base pairing in RNA. Structures, energies, and stabilities from quantum chemical calculations.
    Mládek A, Sharma P, Mitra A, Bhattacharyya D, Sponer J, Sponer JE.
    J Phys Chem B; 2009 Feb 12; 113(6):1743-55. PubMed ID: 19152254
    [Abstract] [Full Text] [Related]

  • 16. Solution structure of (rGCGGACGC)2 by two-dimensional NMR and the iterative relaxation matrix approach.
    Wu M, Turner DH.
    Biochemistry; 1996 Jul 30; 35(30):9677-89. PubMed ID: 8703939
    [Abstract] [Full Text] [Related]

  • 17. Heterogeneity and dynamics of the ligand recognition mode in purine-sensing riboswitches.
    Jain N, Zhao L, Liu JD, Xia T.
    Biochemistry; 2010 May 04; 49(17):3703-14. PubMed ID: 20345178
    [Abstract] [Full Text] [Related]

  • 18. NMR reveals the absence of hydrogen bonding in adjacent UU and AG mismatches in an isolated internal loop from ribosomal RNA.
    Shankar N, Xia T, Kennedy SD, Krugh TR, Mathews DH, Turner DH.
    Biochemistry; 2007 Nov 06; 46(44):12665-78. PubMed ID: 17929882
    [Abstract] [Full Text] [Related]

  • 19. Structure of an RNA internal loop consisting of tandem C-A+ base pairs.
    Jang SB, Hung LW, Chi YI, Holbrook EL, Carter RJ, Holbrook SR.
    Biochemistry; 1998 Aug 25; 37(34):11726-31. PubMed ID: 9718295
    [Abstract] [Full Text] [Related]

  • 20. Consecutive GA pairs stabilize medium-size RNA internal loops.
    Chen G, Turner DH.
    Biochemistry; 2006 Mar 28; 45(12):4025-43. PubMed ID: 16548530
    [Abstract] [Full Text] [Related]

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