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Journal Abstract Search

468 related items for PubMed ID: 15784748

  • 1. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
    Matsui H, Sato K, Sakakibara Y.
    Bioinformatics; 2005 Jun 01; 21(11):2611-7. PubMed ID: 15784748
    [Abstract] [Full Text] [Related]

  • 2. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
    Matsui H, Sato K, Sakakibara Y.
    Proc IEEE Comput Syst Bioinform Conf; 2004 Jun 01; ():290-9. PubMed ID: 16448022
    [Abstract] [Full Text] [Related]

  • 3. Pair hidden Markov models on tree structures.
    Sakakibara Y.
    Bioinformatics; 2003 Jun 01; 19 Suppl 1():i232-40. PubMed ID: 12855464
    [Abstract] [Full Text] [Related]

  • 4. An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots.
    Ruan J, Stormo GD, Zhang W.
    Bioinformatics; 2004 Jan 01; 20(1):58-66. PubMed ID: 14693809
    [Abstract] [Full Text] [Related]

  • 5. A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences.
    Ji Y, Xu X, Stormo GD.
    Bioinformatics; 2004 Jul 10; 20(10):1591-602. PubMed ID: 14962926
    [Abstract] [Full Text] [Related]

  • 6. RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment.
    Xu X, Ji Y, Stormo GD.
    Bioinformatics; 2007 Aug 01; 23(15):1883-91. PubMed ID: 17537756
    [Abstract] [Full Text] [Related]

  • 7. Predicting a set of minimal free energy RNA secondary structures common to two sequences.
    Mathews DH.
    Bioinformatics; 2005 May 15; 21(10):2246-53. PubMed ID: 15731207
    [Abstract] [Full Text] [Related]

  • 8. RNA secondary structural alignment with conditional random fields.
    Sato K, Sakakibara Y.
    Bioinformatics; 2005 Sep 01; 21 Suppl 2():ii237-42. PubMed ID: 16204111
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  • 10. RNA pseudoknot modeling using intersections of stochastic context free grammars with applications to database search.
    Brown M, Wilson C.
    Pac Symp Biocomput; 1996 Sep 01; ():109-25. PubMed ID: 9390227
    [Abstract] [Full Text] [Related]

  • 11. CONTRAfold: RNA secondary structure prediction without physics-based models.
    Do CB, Woods DA, Batzoglou S.
    Bioinformatics; 2006 Jul 15; 22(14):e90-8. PubMed ID: 16873527
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  • 18. A method for aligning RNA secondary structures and its application to RNA motif detection.
    Liu J, Wang JT, Hu J, Tian B.
    BMC Bioinformatics; 2005 Apr 07; 6():89. PubMed ID: 15817128
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  • 20. Aligning two RNA secondary structures with l-block.
    Wang Z, Tillier ER.
    Biomol Eng; 2007 Sep 07; 24(3):321-6. PubMed ID: 17502167
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