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Journal Abstract Search

1062 related items for PubMed ID: 15921531

  • 21. Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios.
    Clark AG, Glanowski S, Nielsen R, Thomas PD, Kejariwal A, Todd MA, Tanenbaum DM, Civello D, Lu F, Murphy B, Ferriera S, Wang G, Zheng X, White TJ, Sninsky JJ, Adams MD, Cargill M.
    Science; 2003 Dec 12; 302(5652):1960-3. PubMed ID: 14671302
    [Abstract] [Full Text] [Related]

  • 22. A comparative genome approach to marker ordering.
    Faraut T, de Givry S, Chabrier P, Derrien T, Galibert F, Hitte C, Schiex T.
    Bioinformatics; 2007 Jan 15; 23(2):e50-6. PubMed ID: 17237105
    [Abstract] [Full Text] [Related]

  • 23. Identification of putative regulatory upstream ORFs in the yeast genome using heuristics and evolutionary conservation.
    Cvijović M, Dalevi D, Bilsland E, Kemp GJ, Sunnerhagen P.
    BMC Bioinformatics; 2007 Aug 08; 8():295. PubMed ID: 17686169
    [Abstract] [Full Text] [Related]

  • 24. indel-Seq-Gen: a new protein family simulator incorporating domains, motifs, and indels.
    Strope CL, Scott SD, Moriyama EN.
    Mol Biol Evol; 2007 Mar 08; 24(3):640-9. PubMed ID: 17158778
    [Abstract] [Full Text] [Related]

  • 25. Phylogenetic relationships and heterogeneous evolutionary processes among phrynosomatine sand lizards (Squamata, Iguanidae) revisited.
    Schulte JA, de Queiroz K.
    Mol Phylogenet Evol; 2008 May 08; 47(2):700-16. PubMed ID: 18362078
    [Abstract] [Full Text] [Related]

  • 26. More robust detection of motifs in coexpressed genes by using phylogenetic information.
    Monsieurs P, Thijs G, Fadda AA, De Keersmaecker SC, Vanderleyden J, De Moor B, Marchal K.
    BMC Bioinformatics; 2006 Mar 20; 7():160. PubMed ID: 16549017
    [Abstract] [Full Text] [Related]

  • 27. Indelign: a probabilistic framework for annotation of insertions and deletions in a multiple alignment.
    Kim J, Sinha S.
    Bioinformatics; 2007 Feb 01; 23(3):289-97. PubMed ID: 17110370
    [Abstract] [Full Text] [Related]

  • 28. Simulating DNA coding sequence evolution with EvolveAGene 3.
    Hall BG.
    Mol Biol Evol; 2008 Apr 01; 25(4):688-95. PubMed ID: 18192698
    [Abstract] [Full Text] [Related]

  • 29. Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions.
    Liu L, Pearl DK.
    Syst Biol; 2007 Jun 01; 56(3):504-14. PubMed ID: 17562474
    [Abstract] [Full Text] [Related]

  • 30. Calculating the evolutionary rates of different genes: a fast, accurate estimator with applications to maximum likelihood phylogenetic analysis.
    Bevan RB, Lang BF, Bryant D.
    Syst Biol; 2005 Dec 01; 54(6):900-15. PubMed ID: 16282169
    [Abstract] [Full Text] [Related]

  • 31. Prediction of functional specificity determinants from protein sequences using log-likelihood ratios.
    Pei J, Cai W, Kinch LN, Grishin NV.
    Bioinformatics; 2006 Jan 15; 22(2):164-71. PubMed ID: 16278237
    [Abstract] [Full Text] [Related]

  • 32. Tree disagreement: measuring and testing incongruence in phylogenies.
    Planet PJ.
    J Biomed Inform; 2006 Feb 15; 39(1):86-102. PubMed ID: 16243006
    [Abstract] [Full Text] [Related]

  • 33. apTreeshape: statistical analysis of phylogenetic tree shape.
    Bortolussi N, Durand E, Blum M, François O.
    Bioinformatics; 2006 Feb 01; 22(3):363-4. PubMed ID: 16322049
    [Abstract] [Full Text] [Related]

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  • 36. Comparison of the accuracies of several phylogenetic methods using protein and DNA sequences.
    Hall BG.
    Mol Biol Evol; 2005 Mar 01; 22(3):792-802. PubMed ID: 15590907
    [Abstract] [Full Text] [Related]

  • 37. Fossil calibrations and molecular divergence time estimates in centrarchid fishes (Teleostei: Centrarchidae).
    Near TJ, Bolnick DI, Wainwright PC.
    Evolution; 2005 Aug 01; 59(8):1768-82. PubMed ID: 16329246
    [Abstract] [Full Text] [Related]

  • 38. Tracing the evolutionary history of Drosophila regulatory regions with models that identify transcription factor binding sites.
    Dermitzakis ET, Bergman CM, Clark AG.
    Mol Biol Evol; 2003 May 01; 20(5):703-14. PubMed ID: 12679540
    [Abstract] [Full Text] [Related]

  • 39. Maximum likelihood of phylogenetic networks.
    Jin G, Nakhleh L, Snir S, Tuller T.
    Bioinformatics; 2006 Nov 01; 22(21):2604-11. PubMed ID: 16928736
    [Abstract] [Full Text] [Related]

  • 40. Phylogenetic footprinting reveals extensive conservation of Sonic Hedgehog (SHH) regulatory elements.
    Lemos B, Yunes JA, Vargas FR, Moreira MA, Cardoso AA, Seuánez HN.
    Genomics; 2004 Sep 01; 84(3):511-23. PubMed ID: 15498458
    [Abstract] [Full Text] [Related]

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