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698 related items for PubMed ID: 15924427

  • 1. Structural effects of hypermodified nucleosides in the Escherichia coli and human tRNALys anticodon loop: the effect of nucleosides s2U, mcm5U, mcm5s2U, mnm5s2U, t6A, and ms2t6A.
    Durant PC, Bajji AC, Sundaram M, Kumar RK, Davis DR.
    Biochemistry; 2005 Jun 07; 44(22):8078-89. PubMed ID: 15924427
    [Abstract] [Full Text] [Related]

  • 2. The role of modifications in codon discrimination by tRNA(Lys)UUU.
    Murphy FV, Ramakrishnan V, Malkiewicz A, Agris PF.
    Nat Struct Mol Biol; 2004 Dec 07; 11(12):1186-91. PubMed ID: 15558052
    [Abstract] [Full Text] [Related]

  • 3. Hypermodified nucleosides in the anticodon of tRNALys stabilize a canonical U-turn structure.
    Sundaram M, Durant PC, Davis DR.
    Biochemistry; 2000 Oct 17; 39(41):12575-84. PubMed ID: 11027137
    [Abstract] [Full Text] [Related]

  • 4. Metal ion stabilization of the U-turn of the A37 N6-dimethylallyl-modified anticodon stem-loop of Escherichia coli tRNAPhe.
    Cabello-Villegas J, Tworowska I, Nikonowicz EP.
    Biochemistry; 2004 Jan 13; 43(1):55-66. PubMed ID: 14705931
    [Abstract] [Full Text] [Related]

  • 5. The effect of pseudouridine and pH on the structure and dynamics of the anticodon stem-loop of tRNA(Lys,3).
    Durant PC, Davis DR.
    Nucleic Acids Symp Ser; 1997 Jan 13; (36):56-7. PubMed ID: 9478205
    [Abstract] [Full Text] [Related]

  • 6. Human tRNA(Lys3)(UUU) is pre-structured by natural modifications for cognate and wobble codon binding through keto-enol tautomerism.
    Vendeix FA, Murphy FV, Cantara WA, Leszczyńska G, Gustilo EM, Sproat B, Malkiewicz A, Agris PF.
    J Mol Biol; 2012 Mar 02; 416(4):467-85. PubMed ID: 22227389
    [Abstract] [Full Text] [Related]

  • 7. Modified nucleoside dependent Watson-Crick and wobble codon binding by tRNALysUUU species.
    Yarian C, Marszalek M, Sochacka E, Malkiewicz A, Guenther R, Miskiewicz A, Agris PF.
    Biochemistry; 2000 Nov 07; 39(44):13390-5. PubMed ID: 11063576
    [Abstract] [Full Text] [Related]

  • 8. Functional anticodon architecture of human tRNALys3 includes disruption of intraloop hydrogen bonding by the naturally occurring amino acid modification, t6A.
    Stuart JW, Gdaniec Z, Guenther R, Marszalek M, Sochacka E, Malkiewicz A, Agris PF.
    Biochemistry; 2000 Nov 07; 39(44):13396-404. PubMed ID: 11063577
    [Abstract] [Full Text] [Related]

  • 9. Tertiary structural analysis of Escherichia coli lysine tRNA.
    Hayashi N, Kawai G, Takayanagi M, Noguchi T, Ueda T, Nishikawa K, Miura K, Miyazawa T, Yokoyama S, Watanabe K.
    Nucleic Acids Symp Ser; 1993 Nov 07; (29):195-6. PubMed ID: 8247766
    [Abstract] [Full Text] [Related]

  • 10. Solution conformations of unmodified and A(37)N(6)-dimethylallyl modified anticodon stem-loops of Escherichia coli tRNA(Phe).
    Cabello-Villegas J, Winkler ME, Nikonowicz EP.
    J Mol Biol; 2002 Jun 21; 319(5):1015-34. PubMed ID: 12079344
    [Abstract] [Full Text] [Related]

  • 11. Specificity of phage display selected peptides for modified anticodon stem and loop domains of tRNA.
    Eshete M, Marchbank MT, Deutscher SL, Sproat B, Leszczynska G, Malkiewicz A, Agris PF.
    Protein J; 2007 Jan 21; 26(1):61-73. PubMed ID: 17237992
    [Abstract] [Full Text] [Related]

  • 12. An RNA complex of the HIV-1 A-loop and tRNA(Lys,3) is stabilized by nucleoside modifications.
    Bajji AC, Sundaram M, Myszka DG, Davis DR.
    J Am Chem Soc; 2002 Dec 04; 124(48):14302-3. PubMed ID: 12452693
    [Abstract] [Full Text] [Related]

  • 13. Anticodon domain modifications contribute order to tRNA for ribosome-mediated codon binding.
    Vendeix FA, Dziergowska A, Gustilo EM, Graham WD, Sproat B, Malkiewicz A, Agris PF.
    Biochemistry; 2008 Jun 10; 47(23):6117-29. PubMed ID: 18473483
    [Abstract] [Full Text] [Related]

  • 14. Unconventional structure of tRNA(Lys)SUU anticodon explains tRNA's role in bacterial and mammalian ribosomal frameshifting and primer selection by HIV-1.
    Agris PF, Guenther R, Ingram PC, Basti MM, Stuart JW, Sochacka E, Malkiewicz A.
    RNA; 1997 Apr 10; 3(4):420-8. PubMed ID: 9085848
    [Abstract] [Full Text] [Related]

  • 15. Preferences of AAA/AAG codon recognition by modified nucleosides, τm5s2U34 and t6A37 present in tRNALys.
    Sonawane KD, Kamble AS, Fandilolu PM.
    J Biomol Struct Dyn; 2018 Dec 10; 36(16):4182-4196. PubMed ID: 29243556
    [Abstract] [Full Text] [Related]

  • 16. Structural requirements for enzymatic formation of threonylcarbamoyladenosine (t6A) in tRNA: an in vivo study with Xenopus laevis oocytes.
    Morin A, Auxilien S, Senger B, Tewari R, Grosjean H.
    RNA; 1998 Jan 10; 4(1):24-37. PubMed ID: 9436905
    [Abstract] [Full Text] [Related]

  • 17. Solution structure of psi32-modified anticodon stem-loop of Escherichia coli tRNAPhe.
    Cabello-Villegas J, Nikonowicz EP.
    Nucleic Acids Res; 2005 Jan 10; 33(22):6961-71. PubMed ID: 16377777
    [Abstract] [Full Text] [Related]

  • 18. The crystal structure of HIV reverse-transcription primer tRNA(Lys,3) shows a canonical anticodon loop.
    Bénas P, Bec G, Keith G, Marquet R, Ehresmann C, Ehresmann B, Dumas P.
    RNA; 2000 Oct 10; 6(10):1347-55. PubMed ID: 11073212
    [Abstract] [Full Text] [Related]

  • 19. Molecular dynamics simulations of human tRNA Lys,3 UUU: the role of modified bases in mRNA recognition.
    McCrate NE, Varner ME, Kim KI, Nagan MC.
    Nucleic Acids Res; 2006 Oct 10; 34(19):5361-8. PubMed ID: 17012271
    [Abstract] [Full Text] [Related]

  • 20. Simulation study of the ability of a computationally-designed peptide to recognize target tRNALys3 and other decoy tRNAs.
    Xiao X, Zhao B, Agris PF, Hall CK.
    Protein Sci; 2016 Dec 10; 25(12):2243-2255. PubMed ID: 27680513
    [Abstract] [Full Text] [Related]

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