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Journal Abstract Search

776 related items for PubMed ID: 15941743

  • 1. A new progressive-iterative algorithm for multiple structure alignment.
    Lupyan D, Leo-Macias A, Ortiz AR.
    Bioinformatics; 2005 Aug 01; 21(15):3255-63. PubMed ID: 15941743
    [Abstract] [Full Text] [Related]

  • 2. An iterative refinement algorithm for consistency based multiple structural alignment methods.
    Chen Y, Crippen GM.
    Bioinformatics; 2006 Sep 01; 22(17):2087-93. PubMed ID: 16809393
    [Abstract] [Full Text] [Related]

  • 3. PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
    Pei J, Grishin NV.
    Bioinformatics; 2007 Apr 01; 23(7):802-8. PubMed ID: 17267437
    [Abstract] [Full Text] [Related]

  • 4. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
    Yang AS, Honig B.
    J Mol Biol; 2000 Aug 18; 301(3):691-711. PubMed ID: 10966778
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  • 6. Improvement of alignment accuracy utilizing sequentially conserved motifs.
    Chakrabarti S, Bhardwaj N, Anand PA, Sowdhamini R.
    BMC Bioinformatics; 2004 Oct 28; 5():167. PubMed ID: 15509307
    [Abstract] [Full Text] [Related]

  • 7. HYPROSP II--a knowledge-based hybrid method for protein secondary structure prediction based on local prediction confidence.
    Lin HN, Chang JM, Wu KP, Sung TY, Hsu WL.
    Bioinformatics; 2005 Aug 01; 21(15):3227-33. PubMed ID: 15932901
    [Abstract] [Full Text] [Related]

  • 8. MUSTANG: a multiple structural alignment algorithm.
    Konagurthu AS, Whisstock JC, Stuckey PJ, Lesk AM.
    Proteins; 2006 Aug 15; 64(3):559-74. PubMed ID: 16736488
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  • 9. Multiple sequence alignments.
    Wallace IM, Blackshields G, Higgins DG.
    Curr Opin Struct Biol; 2005 Jun 15; 15(3):261-6. PubMed ID: 15963889
    [Abstract] [Full Text] [Related]

  • 10. Prediction of functional specificity determinants from protein sequences using log-likelihood ratios.
    Pei J, Cai W, Kinch LN, Grishin NV.
    Bioinformatics; 2006 Jan 15; 22(2):164-71. PubMed ID: 16278237
    [Abstract] [Full Text] [Related]

  • 11. A structural alignment kernel for protein structures.
    Qiu J, Hue M, Ben-Hur A, Vert JP, Noble WS.
    Bioinformatics; 2007 May 01; 23(9):1090-8. PubMed ID: 17234638
    [Abstract] [Full Text] [Related]

  • 12. Modeling protein loops with knowledge-based prediction of sequence-structure alignment.
    Peng HP, Yang AS.
    Bioinformatics; 2007 Nov 01; 23(21):2836-42. PubMed ID: 17827204
    [Abstract] [Full Text] [Related]

  • 13. SSEP-Domain: protein domain prediction by alignment of secondary structure elements and profiles.
    Gewehr JE, Zimmer R.
    Bioinformatics; 2006 Jan 15; 22(2):181-7. PubMed ID: 16267083
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  • 16. VISSA: a program to visualize structural features from structure sequence alignment.
    Li W, Godzik A.
    Bioinformatics; 2006 Apr 01; 22(7):887-8. PubMed ID: 16434438
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  • 18. Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments.
    Gotoh O.
    J Mol Biol; 1996 Dec 13; 264(4):823-38. PubMed ID: 8980688
    [Abstract] [Full Text] [Related]

  • 19. Protein backbone angle prediction with machine learning approaches.
    Kuang R, Leslie CS, Yang AS.
    Bioinformatics; 2004 Jul 10; 20(10):1612-21. PubMed ID: 14988121
    [Abstract] [Full Text] [Related]

  • 20. A comparison of scoring functions for protein sequence profile alignment.
    Edgar RC, Sjölander K.
    Bioinformatics; 2004 May 22; 20(8):1301-8. PubMed ID: 14962936
    [Abstract] [Full Text] [Related]

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