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Journal Abstract Search

139 related items for PubMed ID: 15956103

  • 1. Loss of G-A base pairs is insufficient for achieving a large opening of U4 snRNA K-turn motif.
    Cojocaru V, Klement R, Jovin TM.
    Nucleic Acids Res; 2005; 33(10):3435-46. PubMed ID: 15956103
    [Abstract] [Full Text] [Related]

  • 2. Detecting protein-induced folding of the U4 snRNA kink-turn by single-molecule multiparameter FRET measurements.
    Woźniak AK, Nottrott S, Kühn-Hölsken E, Schröder GF, Grubmüller H, Lührmann R, Seidel CA, Oesterhelt F.
    RNA; 2005 Oct; 11(10):1545-54. PubMed ID: 16199764
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  • 4. The snRNP 15.5K protein folds its cognate K-turn RNA: a combined theoretical and biochemical study.
    Cojocaru V, Nottrott S, Klement R, Jovin TM.
    RNA; 2005 Feb; 11(2):197-209. PubMed ID: 15659359
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  • 5. Structural dynamics of the box C/D RNA kink-turn and its complex with proteins: the role of the A-minor 0 interaction, long-residency water bridges, and structural ion-binding sites revealed by molecular simulations.
    Spacková N, Réblová K, Sponer J.
    J Phys Chem B; 2010 Aug 19; 114(32):10581-93. PubMed ID: 20701388
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  • 6. Hinge-like motions in RNA kink-turns: the role of the second a-minor motif and nominally unpaired bases.
    Rázga F, Koca J, Sponer J, Leontis NB.
    Biophys J; 2005 May 19; 88(5):3466-85. PubMed ID: 15722438
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  • 8. The 5' stem-loop from human U4 snRNA adopts a novel conformation stabilized by G-C and G-U base pairs.
    Sahasrabudhe PV, Sun J, Gmeiner WH.
    J Biomol Struct Dyn; 1997 Apr 19; 14(5):567-77. PubMed ID: 9130079
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  • 9. Solution structure of an RNA internal loop with three consecutive sheared GA pairs.
    Chen G, Znosko BM, Kennedy SD, Krugh TR, Turner DH.
    Biochemistry; 2005 Mar 01; 44(8):2845-56. PubMed ID: 15723528
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  • 10. A-minor tertiary interactions in RNA kink-turns. Molecular dynamics and quantum chemical analysis.
    Réblová K, Šponer JE, Špačková N, Beššeová I, Šponer J.
    J Phys Chem B; 2011 Dec 01; 115(47):13897-910. PubMed ID: 21999672
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  • 11. Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment.
    Vidovic I, Nottrott S, Hartmuth K, Lührmann R, Ficner R.
    Mol Cell; 2000 Dec 01; 6(6):1331-42. PubMed ID: 11163207
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  • 13. The unstable part of the apical stem of duck hepatitis B virus epsilon shows enhanced base pair opening but not pico- to nanosecond dynamics and is essential for reverse transcriptase binding.
    Ampt KA, van der Werf RM, Nelissen FH, Tessari M, Wijmenga SS.
    Biochemistry; 2009 Nov 10; 48(44):10499-508. PubMed ID: 19817488
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  • 14. Structure of the Sm binding site from human U4 snRNA derived from a 3 ns PME molecular dynamics simulation.
    Guo J, Daizadeh I, Gmeiner WH.
    J Biomol Struct Dyn; 2000 Dec 10; 18(3):335-44. PubMed ID: 11149510
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  • 15. NMR studies of the effect of GA-AG base pairs to the active conformation of hammerhead ribozyme.
    Amano M.
    Nucleic Acids Symp Ser (Oxf); 2006 Dec 10; (50):43-4. PubMed ID: 17150808
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  • 16. Organization of core spliceosomal components U5 snRNA loop I and U4/U6 Di-snRNP within U4/U6.U5 Tri-snRNP as revealed by electron cryomicroscopy.
    Sander B, Golas MM, Makarov EM, Brahms H, Kastner B, Lührmann R, Stark H.
    Mol Cell; 2006 Oct 20; 24(2):267-78. PubMed ID: 17052460
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  • 18. Stabilization energies of the hydrogen-bonded and stacked structures of nucleic acid base pairs in the crystal geometries of CG, AT, and AC DNA steps and in the NMR geometry of the 5'-d(GCGAAGC)-3' hairpin: Complete basis set calculations at the MP2 and CCSD(T) levels.
    Dabkowska I, Gonzalez HV, Jurecka P, Hobza P.
    J Phys Chem A; 2005 Feb 17; 109(6):1131-6. PubMed ID: 16833422
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  • 20. Insight into the intrinsic flexibility of the SL1 stem-loop from genomic RNA of HIV-1 as probed by molecular dynamics simulation.
    Mazier S, Genest D.
    Biopolymers; 2008 Mar 17; 89(3):187-96. PubMed ID: 18008323
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