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Journal Abstract Search

506 related items for PubMed ID: 16005885

  • 1. The limit of accuracy of protein modeling: influence of crystal packing on protein structure.
    Eyal E, Gerzon S, Potapov V, Edelman M, Sobolev V.
    J Mol Biol; 2005 Aug 12; 351(2):431-42. PubMed ID: 16005885
    [Abstract] [Full Text] [Related]

  • 2. A large data set comparison of protein structures determined by crystallography and NMR: statistical test for structural differences and the effect of crystal packing.
    Andrec M, Snyder DA, Zhou Z, Young J, Montelione GT, Levy RM.
    Proteins; 2007 Nov 15; 69(3):449-65. PubMed ID: 17623851
    [Abstract] [Full Text] [Related]

  • 3. Crystal packing effects on protein loops.
    Rapp CS, Pollack RM.
    Proteins; 2005 Jul 01; 60(1):103-9. PubMed ID: 15852307
    [Abstract] [Full Text] [Related]

  • 4. Protein flexibility and adaptability seen in 25 crystal forms of T4 lysozyme.
    Zhang XJ, Wozniak JA, Matthews BW.
    J Mol Biol; 1995 Jul 21; 250(4):527-52. PubMed ID: 7616572
    [Abstract] [Full Text] [Related]

  • 5. Statistical and molecular dynamics studies of buried waters in globular proteins.
    Park S, Saven JG.
    Proteins; 2005 Aug 15; 60(3):450-63. PubMed ID: 15937899
    [Abstract] [Full Text] [Related]

  • 6. Characterization of the denaturation of human alpha-lactalbumin in urea by molecular dynamics simulations.
    Smith LJ, Jones RM, van Gunsteren WF.
    Proteins; 2005 Feb 01; 58(2):439-49. PubMed ID: 15558602
    [Abstract] [Full Text] [Related]

  • 7. Protein imperfections: separating intrinsic from extrinsic variation of torsion angles.
    Butterfoss GL, Richardson JS, Hermans J.
    Acta Crystallogr D Biol Crystallogr; 2005 Jan 01; 61(Pt 1):88-98. PubMed ID: 15608380
    [Abstract] [Full Text] [Related]

  • 8. Comparing protein-ligand docking programs is difficult.
    Cole JC, Murray CW, Nissink JW, Taylor RD, Taylor R.
    Proteins; 2005 Aug 15; 60(3):325-32. PubMed ID: 15937897
    [Abstract] [Full Text] [Related]

  • 9. High-resolution prediction of protein helix positions and orientations.
    Li X, Jacobson MP, Friesner RA.
    Proteins; 2004 May 01; 55(2):368-82. PubMed ID: 15048828
    [Abstract] [Full Text] [Related]

  • 10. Ab initio computational modeling of loops in G-protein-coupled receptors: lessons from the crystal structure of rhodopsin.
    Mehler EL, Hassan SA, Kortagere S, Weinstein H.
    Proteins; 2006 Aug 15; 64(3):673-90. PubMed ID: 16729264
    [Abstract] [Full Text] [Related]

  • 11. Evaluating protein structures determined by structural genomics consortia.
    Bhattacharya A, Tejero R, Montelione GT.
    Proteins; 2007 Mar 01; 66(4):778-95. PubMed ID: 17186527
    [Abstract] [Full Text] [Related]

  • 12. The Protein Coil Library: a structural database of nonhelix, nonstrand fragments derived from the PDB.
    Fitzkee NC, Fleming PJ, Rose GD.
    Proteins; 2005 Mar 01; 58(4):852-4. PubMed ID: 15657933
    [Abstract] [Full Text] [Related]

  • 13. Structural prediction of peptides binding to MHC class I molecules.
    Bui HH, Schiewe AJ, von Grafenstein H, Haworth IS.
    Proteins; 2006 Apr 01; 63(1):43-52. PubMed ID: 16447245
    [Abstract] [Full Text] [Related]

  • 14. Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms.
    Word JM, Lovell SC, LaBean TH, Taylor HC, Zalis ME, Presley BK, Richardson JS, Richardson DC.
    J Mol Biol; 1999 Jan 29; 285(4):1711-33. PubMed ID: 9917407
    [Abstract] [Full Text] [Related]

  • 15. Benchmarking of TASSER in the ab initio limit.
    Borreguero JM, Skolnick J.
    Proteins; 2007 Jul 01; 68(1):48-56. PubMed ID: 17444524
    [Abstract] [Full Text] [Related]

  • 16. The targets of CAPRI rounds 6-12.
    Janin J.
    Proteins; 2007 Dec 01; 69(4):699-703. PubMed ID: 17671980
    [Abstract] [Full Text] [Related]

  • 17. Docking and scoring protein complexes: CAPRI 3rd Edition.
    Lensink MF, Méndez R, Wodak SJ.
    Proteins; 2007 Dec 01; 69(4):704-18. PubMed ID: 17918726
    [Abstract] [Full Text] [Related]

  • 18. Implicit flexibility in protein docking: cross-docking and local refinement.
    Król M, Chaleil RA, Tournier AL, Bates PA.
    Proteins; 2007 Dec 01; 69(4):750-7. PubMed ID: 17671977
    [Abstract] [Full Text] [Related]

  • 19. The performance of ZDOCK and ZRANK in rounds 6-11 of CAPRI.
    Wiehe K, Pierce B, Tong WW, Hwang H, Mintseris J, Weng Z.
    Proteins; 2007 Dec 01; 69(4):719-25. PubMed ID: 17803212
    [Abstract] [Full Text] [Related]

  • 20. Development and testing of an automated approach to protein docking.
    Tovchigrechko A, Vakser IA.
    Proteins; 2005 Aug 01; 60(2):296-301. PubMed ID: 15981259
    [Abstract] [Full Text] [Related]

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