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Journal Abstract Search

384 related items for PubMed ID: 16088925

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  • 2. Challenges in structure prediction of oligomeric proteins at the united-residue level: searching the multiple-chain energy landscape with CSA and CFMC.
    Saunders JA, Scheraga HA.
    Biopolymers; 2003 Mar; 68(3):318-32. PubMed ID: 12601792
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  • 4. An efficient molecular docking using conformational space annealing.
    Lee K, Czaplewski C, Kim SY, Lee J.
    J Comput Chem; 2005 Jan 15; 26(1):78-87. PubMed ID: 15538770
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  • 5. Monte Carlo minimization with thermalization for global optimization of polypeptide conformations in cartesian coordinate space.
    Caflisch A, Niederer P, Anliker M.
    Proteins; 1992 Sep 15; 14(1):102-9. PubMed ID: 1409559
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  • 8. Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility.
    Schueler-Furman O, Wang C, Baker D.
    Proteins; 2005 Aug 01; 60(2):187-94. PubMed ID: 15981249
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  • 11. Monte Carlo sampling algorithm for searching a scale-transformed energy space of polypeptides.
    Nakamura H.
    J Comput Chem; 2002 Mar 01; 23(4):511-6. PubMed ID: 11908088
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  • 12. New Monte Carlo algorithms for protein folding.
    Hansmann UH, Okamoto Y.
    Curr Opin Struct Biol; 1999 Apr 01; 9(2):177-83. PubMed ID: 10322208
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  • 13. Simulated annealing coupled replica exchange molecular dynamics--an efficient conformational sampling method.
    Kannan S, Zacharias M.
    J Struct Biol; 2009 Jun 01; 166(3):288-94. PubMed ID: 19272454
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  • 17. LOOPER: a molecular mechanics-based algorithm for protein loop prediction.
    Spassov VZ, Flook PK, Yan L.
    Protein Eng Des Sel; 2008 Feb 01; 21(2):91-100. PubMed ID: 18194981
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  • 18. Generalized-ensemble algorithms: enhanced sampling techniques for Monte Carlo and molecular dynamics simulations.
    Okamoto Y.
    J Mol Graph Model; 2004 May 01; 22(5):425-39. PubMed ID: 15099838
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  • 19. Prediction of the structures of proteins with the UNRES force field, including dynamic formation and breaking of disulfide bonds.
    Czaplewski C, Oldziej S, Liwo A, Scheraga HA.
    Protein Eng Des Sel; 2004 Jan 01; 17(1):29-36. PubMed ID: 14985535
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  • 20. Lattice models of peptide aggregation: evaluation of conformational search algorithms.
    Oakley MT, Garibaldi JM, Hirst JD.
    J Comput Chem; 2005 Nov 30; 26(15):1638-46. PubMed ID: 16170797
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