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Journal Abstract Search

441 related items for PubMed ID: 16141249

  • 1. BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing.
    Bock C, Reither S, Mikeska T, Paulsen M, Walter J, Lengauer T.
    Bioinformatics; 2005 Nov 01; 21(21):4067-8. PubMed ID: 16141249
    [Abstract] [Full Text] [Related]

  • 2. BiQ Analyzer HT: locus-specific analysis of DNA methylation by high-throughput bisulfite sequencing.
    Lutsik P, Feuerbach L, Arand J, Lengauer T, Walter J, Bock C.
    Nucleic Acids Res; 2011 Jul 01; 39(Web Server issue):W551-6. PubMed ID: 21565797
    [Abstract] [Full Text] [Related]

  • 3. DNA methylation analysis by bisulfite conversion, cloning, and sequencing of individual clones.
    Zhang Y, Rohde C, Tierling S, Stamerjohanns H, Reinhardt R, Walter J, Jeltsch A.
    Methods Mol Biol; 2009 Jul 01; 507():177-87. PubMed ID: 18987815
    [Abstract] [Full Text] [Related]

  • 4. BiQ Analyzer HiMod: an interactive software tool for high-throughput locus-specific analysis of 5-methylcytosine and its oxidized derivatives.
    Becker D, Lutsik P, Ebert P, Bock C, Lengauer T, Walter J.
    Nucleic Acids Res; 2014 Jul 01; 42(Web Server issue):W501-7. PubMed ID: 24875479
    [Abstract] [Full Text] [Related]

  • 5. Analysis and Visualization Tool for Targeted Amplicon Bisulfite Sequencing on Ion Torrent Sequencers.
    Pabinger S, Ernst K, Pulverer W, Kallmeyer R, Valdes AM, Metrustry S, Katic D, Nuzzo A, Kriegner A, Vierlinger K, Weinhaeusel A.
    PLoS One; 2016 Jul 01; 11(7):e0160227. PubMed ID: 27467908
    [Abstract] [Full Text] [Related]

  • 6. QUMA: quantification tool for methylation analysis.
    Kumaki Y, Oda M, Okano M.
    Nucleic Acids Res; 2008 Jul 01; 36(Web Server issue):W170-5. PubMed ID: 18487274
    [Abstract] [Full Text] [Related]

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  • 8. TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignments.
    Milne I, Wright F, Rowe G, Marshall DF, Husmeier D, McGuire G.
    Bioinformatics; 2004 Jul 22; 20(11):1806-7. PubMed ID: 14988107
    [Abstract] [Full Text] [Related]

  • 9. Bisulfite sequencing Data Presentation and Compilation (BDPC) web server--a useful tool for DNA methylation analysis.
    Rohde C, Zhang Y, Jurkowski TP, Stamerjohanns H, Reinhardt R, Jeltsch A.
    Nucleic Acids Res; 2008 Mar 22; 36(5):e34. PubMed ID: 18296484
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  • 11. BSPAT: a fast online tool for DNA methylation co-occurrence pattern analysis based on high-throughput bisulfite sequencing data.
    Hu K, Ting AH, Li J.
    BMC Bioinformatics; 2015 Jul 11; 16():220. PubMed ID: 26163275
    [Abstract] [Full Text] [Related]

  • 12. Preparation of genome-wide DNA fragment libraries using bisulfite in polyacrylamide gel electrophoresis slices with formamide denaturation and quality control for massively parallel sequencing by oligonucleotide ligation and detection.
    Ranade SS, Chung CB, Zon G, Boyd VL.
    Anal Biochem; 2009 Jul 15; 390(2):126-35. PubMed ID: 19379703
    [Abstract] [Full Text] [Related]

  • 13. MethyQA: a pipeline for bisulfite-treated methylation sequencing quality assessment.
    Sun S, Noviski A, Yu X.
    BMC Bioinformatics; 2013 Aug 23; 14():259. PubMed ID: 23968174
    [Abstract] [Full Text] [Related]

  • 14. A trimming-and-retrieving alignment scheme for reduced representation bisulfite sequencing.
    Wang X, Yu X, Zhu W, McCombie WR, Antoniou E, Powers RS, Davidson NO, Li E, Williams J.
    Bioinformatics; 2015 Jun 15; 31(12):2040-2. PubMed ID: 25681254
    [Abstract] [Full Text] [Related]

  • 15. Profiling DNA methylation by bisulfite genomic sequencing: problems and solutions.
    Liu L, Wylie RC, Hansen NJ, Andrews LG, Tollefsbol TO.
    Methods Mol Biol; 2004 Jun 15; 287():169-79. PubMed ID: 15273411
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  • 17. Investigation of genomic methylation status using methylation-specific and bisulfite sequencing polymerase chain reaction.
    Carless M.
    Methods Mol Biol; 2009 Jun 15; 523():217-34. PubMed ID: 19381936
    [Abstract] [Full Text] [Related]

  • 18. CpG PatternFinder: a Windows-based utility program for easy and rapid identification of the CpG methylation status of DNA.
    Xu YH, Manoharan HT, Pitot HC.
    Biotechniques; 2007 Sep 15; 43(3):334, 336-40, 342. PubMed ID: 17907576
    [Abstract] [Full Text] [Related]

  • 19. Sequence analysis and editing for bisulphite genomic sequencing projects.
    Carr IM, Valleley EM, Cordery SF, Markham AF, Bonthron DT.
    Nucleic Acids Res; 2007 Sep 15; 35(10):e79. PubMed ID: 17517768
    [Abstract] [Full Text] [Related]

  • 20. Limitations and advantages of MS-HRM and bisulfite sequencing for single locus methylation studies.
    Wojdacz TK, Møller TH, Thestrup BB, Kristensen LS, Hansen LL.
    Expert Rev Mol Diagn; 2010 Jul 15; 10(5):575-80. PubMed ID: 20629507
    [Abstract] [Full Text] [Related]

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