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Journal Abstract Search

217 related items for PubMed ID: 16159924

  • 1. An expression index for Affymetrix GeneChips based on the generalized logarithm.
    Zhou L, Rocke DM.
    Bioinformatics; 2005 Nov 01; 21(21):3983-9. PubMed ID: 16159924
    [Abstract] [Full Text] [Related]

  • 2. A new summarization method for Affymetrix probe level data.
    Hochreiter S, Clevert DA, Obermayer K.
    Bioinformatics; 2006 Apr 15; 22(8):943-9. PubMed ID: 16473874
    [Abstract] [Full Text] [Related]

  • 3. Joint estimation of calibration and expression for high-density oligonucleotide arrays.
    Oberg AL, Mahoney DW, Ballman KV, Therneau TM.
    Bioinformatics; 2006 Oct 01; 22(19):2381-7. PubMed ID: 16877757
    [Abstract] [Full Text] [Related]

  • 4. Normalization for Affymetrix GeneChips.
    Boes T, Neuhäuser M.
    Methods Inf Med; 2005 Oct 01; 44(3):414-7. PubMed ID: 16113766
    [Abstract] [Full Text] [Related]

  • 5. Expression profiling using affymetrix genechip probe arrays.
    Schinke-Braun M, Couget JA.
    Methods Mol Biol; 2007 Oct 01; 366():13-40. PubMed ID: 17568117
    [Abstract] [Full Text] [Related]

  • 6. Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data.
    Shedden K, Chen W, Kuick R, Ghosh D, Macdonald J, Cho KR, Giordano TJ, Gruber SB, Fearon ER, Taylor JM, Hanash S.
    BMC Bioinformatics; 2005 Feb 10; 6():26. PubMed ID: 15705192
    [Abstract] [Full Text] [Related]

  • 7. PQN and DQN: algorithms for expression microarrays.
    Liu WM, Li R, Sun JZ, Wang J, Tsai J, Wen W, Kohlmann A, Williams PM.
    J Theor Biol; 2006 Nov 21; 243(2):273-8. PubMed ID: 16889801
    [Abstract] [Full Text] [Related]

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  • 9. Characterization of mismatch and high-signal intensity probes associated with Affymetrix genechips.
    Wang Y, Miao ZH, Pommier Y, Kawasaki ES, Player A.
    Bioinformatics; 2007 Aug 15; 23(16):2088-95. PubMed ID: 17553856
    [Abstract] [Full Text] [Related]

  • 10. Contrast normalization of oligonucleotide arrays.
    Astrand M.
    J Comput Biol; 2003 Aug 15; 10(1):95-102. PubMed ID: 12676053
    [Abstract] [Full Text] [Related]

  • 11. A new outlier removal approach for cDNA microarray normalization.
    Wu Y, Yan L, Liu H, Sun H, Xie H.
    Biotechniques; 2009 Aug 15; 47(2):691-2, 694-700. PubMed ID: 19737130
    [Abstract] [Full Text] [Related]

  • 12. Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data.
    Yu H, Wang F, Tu K, Xie L, Li YY, Li YX.
    BMC Bioinformatics; 2007 Jun 11; 8():194. PubMed ID: 17559689
    [Abstract] [Full Text] [Related]

  • 13. Systematic order-dependent effect in expression values, variance, detection calls and differential expression in Affymetrix GeneChips.
    Bjork KE, Kafadar K.
    Bioinformatics; 2007 Nov 01; 23(21):2873-80. PubMed ID: 17897972
    [Abstract] [Full Text] [Related]

  • 14. Probes containing runs of guanines provide insights into the biophysics and bioinformatics of Affymetrix GeneChips.
    Langdon WB, Upton GJ, Harrison AP.
    Brief Bioinform; 2009 May 01; 10(3):259-77. PubMed ID: 19359259
    [Abstract] [Full Text] [Related]

  • 15. Statistical analysis of high-density oligonucleotide arrays: a multiplicative noise model.
    Sásik R, Calvo E, Corbeil J.
    Bioinformatics; 2002 Dec 01; 18(12):1633-40. PubMed ID: 12490448
    [Abstract] [Full Text] [Related]

  • 16. Correlation test to assess low-level processing of high-density oligonucleotide microarray data.
    Ploner A, Miller LD, Hall P, Bergh J, Pawitan Y.
    BMC Bioinformatics; 2005 Mar 31; 6():80. PubMed ID: 15799785
    [Abstract] [Full Text] [Related]

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  • 18. Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks.
    Lim WK, Wang K, Lefebvre C, Califano A.
    Bioinformatics; 2007 Jul 01; 23(13):i282-8. PubMed ID: 17646307
    [Abstract] [Full Text] [Related]

  • 19. A benchmark for Affymetrix GeneChip expression measures.
    Cope LM, Irizarry RA, Jaffee HA, Wu Z, Speed TP.
    Bioinformatics; 2004 Feb 12; 20(3):323-31. PubMed ID: 14960458
    [Abstract] [Full Text] [Related]

  • 20. A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat.
    Alberts R, Terpstra P, Hardonk M, Bystrykh LV, de Haan G, Breitling R, Nap JP, Jansen RC.
    BMC Bioinformatics; 2007 Apr 20; 8():132. PubMed ID: 17448222
    [Abstract] [Full Text] [Related]

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