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Journal Abstract Search

288 related items for PubMed ID: 16241257

  • 1. Quasiequilibrium unfolding thermodynamics of a small protein studied by molecular dynamics simulation with an explicit water model.
    Wang J, Zhang Z, Liu H, Shi Y.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2003 Jun; 67(6 Pt 1):061903. PubMed ID: 16241257
    [Abstract] [Full Text] [Related]

  • 2. Protein simulations with an optimized water model: cooperative helix formation and temperature-induced unfolded state collapse.
    Best RB, Mittal J.
    J Phys Chem B; 2010 Nov 25; 114(46):14916-23. PubMed ID: 21038907
    [Abstract] [Full Text] [Related]

  • 3. Phase behavior of a lattice hydrophobic oligomer in explicit water.
    Romero-Vargas Castrillón S, Matysiak S, Stillinger FH, Rossky PJ, Debenedetti PG.
    J Phys Chem B; 2012 Aug 09; 116(31):9540-8. PubMed ID: 22823886
    [Abstract] [Full Text] [Related]

  • 4. Characterization of the denaturation of human alpha-lactalbumin in urea by molecular dynamics simulations.
    Smith LJ, Jones RM, van Gunsteren WF.
    Proteins; 2005 Feb 01; 58(2):439-49. PubMed ID: 15558602
    [Abstract] [Full Text] [Related]

  • 5. Folding thermodynamics of β-hairpins studied by replica-exchange molecular dynamics simulations.
    Zerze GH, Uz B, Mittal J.
    Proteins; 2015 Jul 01; 83(7):1307-15. PubMed ID: 25973961
    [Abstract] [Full Text] [Related]

  • 6. How do chemical denaturants affect the mechanical folding and unfolding of proteins?
    Cao Y, Li H.
    J Mol Biol; 2008 Jan 04; 375(1):316-24. PubMed ID: 18021802
    [Abstract] [Full Text] [Related]

  • 7. Simulation and experiment at high temperatures: ultrafast folding of a thermophilic protein by nucleation-condensation.
    Ferguson N, Day R, Johnson CM, Allen MD, Daggett V, Fersht AR.
    J Mol Biol; 2005 Apr 08; 347(4):855-70. PubMed ID: 15769475
    [Abstract] [Full Text] [Related]

  • 8. Coupling between hydration layer dynamics and unfolding kinetics of HP-36.
    Bandyopadhyay S, Chakraborty S, Bagchi B.
    J Chem Phys; 2006 Aug 28; 125(8):084912. PubMed ID: 16965062
    [Abstract] [Full Text] [Related]

  • 9. Free energy landscape and folding mechanism of a beta-hairpin in explicit water: a replica exchange molecular dynamics study.
    Nguyen PH, Stock G, Mittag E, Hu CK, Li MS.
    Proteins; 2005 Dec 01; 61(4):795-808. PubMed ID: 16240446
    [Abstract] [Full Text] [Related]

  • 10. Fragment reconstitution of a small protein: folding energetics of the reconstituted immunoglobulin binding domain B1 of streptococcal protein G.
    Honda S, Kobayashi N, Munekata E, Uedaira H.
    Biochemistry; 1999 Jan 26; 38(4):1203-13. PubMed ID: 9930980
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  • 12. A water-explicit lattice model of heat-, cold-, and pressure-induced protein unfolding.
    Patel BA, Debenedetti PG, Stillinger FH, Rossky PJ.
    Biophys J; 2007 Dec 15; 93(12):4116-27. PubMed ID: 17766342
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  • 14. Thermodynamic and structural analysis of the folding/unfolding transitions of the Escherichia coli molecular chaperone DnaK.
    Montgomery D, Jordan R, McMacken R, Freire E.
    J Mol Biol; 1993 Jul 20; 232(2):680-92. PubMed ID: 8102181
    [Abstract] [Full Text] [Related]

  • 15. An early intermediate in the folding reaction of the B1 domain of protein G contains a native-like core.
    Park SH, O'Neil KT, Roder H.
    Biochemistry; 1997 Nov 25; 36(47):14277-83. PubMed ID: 9400366
    [Abstract] [Full Text] [Related]

  • 16. Thermal unfolding simulations of a multimeric protein--transition state and unfolding pathways.
    Duan J, Nilsson L.
    Proteins; 2005 May 01; 59(2):170-82. PubMed ID: 15723359
    [Abstract] [Full Text] [Related]

  • 17. Structural characterization of MG and pre-MG states of proteins by MD simulations, NMR, and other techniques.
    Naiyer A, Hassan MI, Islam A, Sundd M, Ahmad F.
    J Biomol Struct Dyn; 2015 May 01; 33(10):2267-84. PubMed ID: 25586676
    [Abstract] [Full Text] [Related]

  • 18. Conformational and thermodynamic characterization of the molten globule state occurring during unfolding of cytochromes-c by weak salt denaturants.
    Qureshi SH, Moza B, Yadav S, Ahmad F.
    Biochemistry; 2003 Feb 18; 42(6):1684-95. PubMed ID: 12578383
    [Abstract] [Full Text] [Related]

  • 19. Temperature and pressure denaturation of chignolin: folding and unfolding simulation by multibaric-multithermal molecular dynamics method.
    Okumura H.
    Proteins; 2012 Oct 18; 80(10):2397-416. PubMed ID: 22641605
    [Abstract] [Full Text] [Related]

  • 20. Helix nucleation kinetics from molecular simulations in explicit solvent.
    Hummer G, García AE, Garde S.
    Proteins; 2001 Jan 01; 42(1):77-84. PubMed ID: 11093262
    [Abstract] [Full Text] [Related]

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