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Journal Abstract Search

544 related items for PubMed ID: 16252940

  • 41. Demixing transition of the aqueous solution of amyloidogenic peptides: a REMD simulation study.
    Singh G, Brovchenko I, Oleinikova A, Winter R.
    J Phys Chem B; 2009 Jul 23; 113(29):9863-70. PubMed ID: 19569617
    [Abstract] [Full Text] [Related]

  • 42. Simulation of DNA double-strand dissociation and formation during replica-exchange molecular dynamics simulations.
    Kannan S, Zacharias M.
    Phys Chem Chem Phys; 2009 Dec 07; 11(45):10589-95. PubMed ID: 20145803
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  • 43. Effects of pH and temperature on the structural and thermodynamic character of alpha-syn12 peptide in aqueous solution.
    Cao Z, Liu L, Wang J.
    J Biomol Struct Dyn; 2010 Dec 07; 28(3):343-53. PubMed ID: 20919750
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  • 44. Optimized explicit-solvent replica exchange molecular dynamics from scratch.
    Nadler W, Hansmann UH.
    J Phys Chem B; 2008 Aug 28; 112(34):10386-7. PubMed ID: 18671362
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  • 45. The influence of different treatments of electrostatic interactions on the thermodynamics of folding of peptides.
    Baumketner A, Shea JE.
    J Phys Chem B; 2005 Nov 17; 109(45):21322-8. PubMed ID: 16853765
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  • 46. Calculation of protein heat capacity from replica-exchange molecular dynamics simulations with different implicit solvent models.
    Yeh IC, Lee MS, Olson MA.
    J Phys Chem B; 2008 Nov 27; 112(47):15064-73. PubMed ID: 18959439
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  • 47. Peptide folding kinetics from replica exchange molecular dynamics.
    Buchete NV, Hummer G.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2008 Mar 27; 77(3 Pt 1):030902. PubMed ID: 18517321
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  • 48. Rapid free energy calculation of peptide self-assembly by REMD umbrella sampling.
    Wolf MG, Jongejan JA, Laman JD, de Leeuw SW.
    J Phys Chem B; 2008 Oct 30; 112(43):13493-8. PubMed ID: 18841883
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  • 49. Probing the free energy landscape of the FBP28WW domain using multiple techniques.
    Periole X, Allen LR, Tamiola K, Mark AE, Paci E.
    J Comput Chem; 2009 May 30; 30(7):1059-68. PubMed ID: 18942730
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  • 50. Loop propensity of the sequence YKGQP from staphylococcal nuclease: implications for the folding of nuclease.
    Patel S, Sasidhar YU.
    J Pept Sci; 2007 Oct 30; 13(10):679-92. PubMed ID: 17787022
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  • 51. Comparative characterization of short monomeric polyglutamine peptides by replica exchange molecular dynamics simulation.
    Nakano M, Watanabe H, Rothstein SM, Tanaka S.
    J Phys Chem B; 2010 May 27; 114(20):7056-61. PubMed ID: 20441177
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  • 52. Enhanced conformational sampling of nucleic acids by a new Hamiltonian replica exchange molecular dynamics approach.
    Curuksu J, Zacharias M.
    J Chem Phys; 2009 Mar 14; 130(10):104110. PubMed ID: 19292526
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  • 53. Application of the multiensemble sampling to the equilibrium folding of proteins.
    Son HS, Kim SY, Lee J, Han KK.
    Bioinformatics; 2006 Aug 01; 22(15):1832-7. PubMed ID: 16766555
    [Abstract] [Full Text] [Related]

  • 54. Replica exchange simulation of reversible folding/unfolding of the Trp-cage miniprotein in explicit solvent: on the structure and possible role of internal water.
    Paschek D, Nymeyer H, García AE.
    J Struct Biol; 2007 Mar 01; 157(3):524-33. PubMed ID: 17293125
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  • 55. Estimating kinetic rates from accelerated molecular dynamics simulations: alanine dipeptide in explicit solvent as a case study.
    de Oliveira CA, Hamelberg D, McCammon JA.
    J Chem Phys; 2007 Nov 07; 127(17):175105. PubMed ID: 17994855
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  • 56. How Efficient Is Replica Exchange Molecular Dynamics? An Analytic Approach.
    Nymeyer H.
    J Chem Theory Comput; 2008 Apr 07; 4(4):626-36. PubMed ID: 26620937
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  • 57. Replica exchange molecular dynamics simulations of amyloid peptide aggregation.
    Cecchini M, Rao F, Seeber M, Caflisch A.
    J Chem Phys; 2004 Dec 01; 121(21):10748-56. PubMed ID: 15549960
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  • 58. Transformation of a design peptide between the α-helix and β-hairpin structures using a helix-strand replica-exchange molecular dynamics simulation.
    Okumura H, Itoh SG.
    Phys Chem Chem Phys; 2013 Sep 07; 15(33):13852-61. PubMed ID: 23839056
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  • 59. Conformational preferences of a short Aib/Ala-based water-soluble peptide as a function of temperature.
    Banerjee R, Chattopadhyay S, Basu G.
    Proteins; 2009 Jul 07; 76(1):184-200. PubMed ID: 19137603
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  • 60. Simulated-tempering replica-exchange method for the multidimensional version.
    Mitsutake A.
    J Chem Phys; 2009 Sep 07; 131(9):094105. PubMed ID: 19739847
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