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Journal Abstract Search

134 related items for PubMed ID: 16298534

  • 1. Cys(x)His(y)-Zn2+ interactions: possibilities and limitations of a simple pairwise force field.
    Calimet N, Simonson T.
    J Mol Graph Model; 2006 Mar; 24(5):404-11. PubMed ID: 16298534
    [Abstract] [Full Text] [Related]

  • 2. Cys(x)His(y)-Zn2+ interactions: thiol vs. thiolate coordination.
    Simonson T, Calimet N.
    Proteins; 2002 Oct 01; 49(1):37-48. PubMed ID: 12211014
    [Abstract] [Full Text] [Related]

  • 3. All-electron calculations of the nucleation structures in metal-induced zinc-finger folding: role of the Peptide backbone.
    Dudev T, Lim C.
    J Am Chem Soc; 2007 Oct 17; 129(41):12497-504. PubMed ID: 17883271
    [Abstract] [Full Text] [Related]

  • 4. Zn protein simulations including charge transfer and local polarization effects.
    Sakharov DV, Lim C.
    J Am Chem Soc; 2005 Apr 06; 127(13):4921-9. PubMed ID: 15796557
    [Abstract] [Full Text] [Related]

  • 5. Coordination number of zinc ions in the phosphotriesterase active site by molecular dynamics and quantum mechanics.
    Koca J, Zhan CG, Rittenhouse RC, Ornstein RL.
    J Comput Chem; 2003 Feb 06; 24(3):368-78. PubMed ID: 12548728
    [Abstract] [Full Text] [Related]

  • 6. Determination of the pK(a) of the four Zn2+-coordinating residues of the distal finger motif of the HIV-1 nucleocapsid protein: consequences on the binding of Zn2+.
    Bombarda E, Morellet N, Cherradi H, Spiess B, Bouaziz S, Grell E, Roques BP, Mély Y.
    J Mol Biol; 2001 Jul 13; 310(3):659-72. PubMed ID: 11439030
    [Abstract] [Full Text] [Related]

  • 7. Metal-coupled folding of Cys2His2 zinc-finger.
    Li W, Zhang J, Wang J, Wang W.
    J Am Chem Soc; 2008 Jan 23; 130(3):892-900. PubMed ID: 18163620
    [Abstract] [Full Text] [Related]

  • 8. Modeling zinc in biomolecules with the self consistent charge-density functional tight binding (SCC-DFTB) method: applications to structural and energetic analysis.
    Elstner M, Cui Q, Munih P, Kaxiras E, Frauenheim T, Karplus M.
    J Comput Chem; 2003 Apr 15; 24(5):565-81. PubMed ID: 12632471
    [Abstract] [Full Text] [Related]

  • 9. Factors governing the protonation state of Zn-bound histidine in proteins: a DFT/CDM study.
    Lin YL, Lim C.
    J Am Chem Soc; 2004 Mar 03; 126(8):2602-12. PubMed ID: 14982470
    [Abstract] [Full Text] [Related]

  • 10. Zinc binding in proteins and solution: a simple but accurate nonbonded representation.
    Stote RH, Karplus M.
    Proteins; 1995 Sep 03; 23(1):12-31. PubMed ID: 8539245
    [Abstract] [Full Text] [Related]

  • 11. Force fields including charge transfer and local polarization effects: Application to proteins containing multi/heavy metal ions.
    Sakharov DV, Lim C.
    J Comput Chem; 2009 Jan 30; 30(2):191-202. PubMed ID: 18566982
    [Abstract] [Full Text] [Related]

  • 12. Development of the force field parameters for phosphoimidazole and phosphohistidine.
    Kosinsky YA, Volynsky PE, Lagant P, Vergoten G, Suzuki E, Arseniev AS, Efremov RG.
    J Comput Chem; 2004 Aug 30; 25(11):1313-21. PubMed ID: 15185324
    [Abstract] [Full Text] [Related]

  • 13. Cysteine and histidine shuffling: mixing and matching cysteine and histidine residues in zinc finger proteins to afford different folds and function.
    Michalek JL, Besold AN, Michel SL.
    Dalton Trans; 2011 Dec 21; 40(47):12619-32. PubMed ID: 21952363
    [Abstract] [Full Text] [Related]

  • 14. Noncovalent interactions involving histidine: the effect of charge on pi-pi stacking and T-shaped interactions with the DNA nucleobases.
    Churchill CD, Wetmore SD.
    J Phys Chem B; 2009 Dec 10; 113(49):16046-58. PubMed ID: 19904910
    [Abstract] [Full Text] [Related]

  • 15. Factors governing the protonation state of cysteines in proteins: an Ab initio/CDM study.
    Dudev T, Lim C.
    J Am Chem Soc; 2002 Jun 12; 124(23):6759-66. PubMed ID: 12047197
    [Abstract] [Full Text] [Related]

  • 16. Micro-solvation of the Zn2+ ion-a case study.
    De S, Ali SM, Ali A, Gaikar VG.
    Phys Chem Chem Phys; 2009 Oct 01; 11(37):8285-94. PubMed ID: 19756285
    [Abstract] [Full Text] [Related]

  • 17. Mechanisms of aurothiomalate-Cys2His2 zinc finger interactions.
    Larabee JL, Hocker JR, Hanas JS.
    Chem Res Toxicol; 2005 Dec 01; 18(12):1943-54. PubMed ID: 16359185
    [Abstract] [Full Text] [Related]

  • 18. Molecular dynamics study of zinc binding to cysteines in a peptide mimic of the alcohol dehydrogenase structural zinc site.
    Brandt EG, Hellgren M, Brinck T, Bergman T, Edholm O.
    Phys Chem Chem Phys; 2009 Feb 14; 11(6):975-83. PubMed ID: 19177216
    [Abstract] [Full Text] [Related]

  • 19. How to hide zinc in a small protein.
    Blindauer CA, Sadler PJ.
    Acc Chem Res; 2005 Jan 14; 38(1):62-9. PubMed ID: 15654738
    [Abstract] [Full Text] [Related]

  • 20. Deducing the energetic cost of protein folding in zinc finger proteins using designed metallopeptides.
    Reddi AR, Guzman TR, Breece RM, Tierney DL, Gibney BR.
    J Am Chem Soc; 2007 Oct 24; 129(42):12815-27. PubMed ID: 17902663
    [Abstract] [Full Text] [Related]

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