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Journal Abstract Search

739 related items for PubMed ID: 16335984

  • 1. Proteomics-grade de novo sequencing approach.
    Savitski MM, Nielsen ML, Kjeldsen F, Zubarev RA.
    J Proteome Res; 2005; 4(6):2348-54. PubMed ID: 16335984
    [Abstract] [Full Text] [Related]

  • 2. De novo sequencing methods in proteomics.
    Hughes C, Ma B, Lajoie GA.
    Methods Mol Biol; 2010; 604():105-21. PubMed ID: 20013367
    [Abstract] [Full Text] [Related]

  • 3. High-throughput identification of proteins and unanticipated sequence modifications using a mass-based alignment algorithm for MS/MS de novo sequencing results.
    Searle BC, Dasari S, Turner M, Reddy AP, Choi D, Wilmarth PA, McCormack AL, David LL, Nagalla SR.
    Anal Chem; 2004 Apr 15; 76(8):2220-30. PubMed ID: 15080731
    [Abstract] [Full Text] [Related]

  • 4. pNovo: de novo peptide sequencing and identification using HCD spectra.
    Chi H, Sun RX, Yang B, Song CQ, Wang LH, Liu C, Fu Y, Yuan ZF, Wang HP, He SM, Dong MQ.
    J Proteome Res; 2010 May 07; 9(5):2713-24. PubMed ID: 20329752
    [Abstract] [Full Text] [Related]

  • 5. CHASE, a charge-assisted sequencing algorithm for automated homology-based protein identifications with matrix-assisted laser desorption/ionization time-of-flight post-source decay fragmentation data.
    Raucci G, Gabrielli M, Novelli S, Picariello G, Collins SH.
    J Mass Spectrom; 2005 Apr 07; 40(4):475-88. PubMed ID: 15712359
    [Abstract] [Full Text] [Related]

  • 6. VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.
    Matthiesen R, Trelle MB, Højrup P, Bunkenborg J, Jensen ON.
    J Proteome Res; 2005 Apr 07; 4(6):2338-47. PubMed ID: 16335983
    [Abstract] [Full Text] [Related]

  • 7. Rapid validation of protein identifications with the borderline statistical confidence via de novo sequencing and MS BLAST searches.
    Wielsch N, Thomas H, Surendranath V, Waridel P, Frank A, Pevzner P, Shevchenko A.
    J Proteome Res; 2006 Sep 07; 5(9):2448-56. PubMed ID: 16944958
    [Abstract] [Full Text] [Related]

  • 8. Functional proteome analysis of the banana plant (Musa spp.) using de novo sequence analysis of derivatized peptides.
    Samyn B, Sergeant K, Carpentier S, Debyser G, Panis B, Swennen R, Van Beeumen J.
    J Proteome Res; 2007 Jan 07; 6(1):70-80. PubMed ID: 17203950
    [Abstract] [Full Text] [Related]

  • 9. CHOMPER: a bioinformatic tool for rapid validation of tandem mass spectrometry search results associated with high-throughput proteomic strategies.
    Eddes JS, Kapp EA, Frecklington DF, Connolly LM, Layton MJ, Moritz RL, Simpson RJ.
    Proteomics; 2002 Sep 07; 2(9):1097-103. PubMed ID: 12362328
    [Abstract] [Full Text] [Related]

  • 10. Enhancing TOF/TOF-based de novo sequencing capability for high throughput protein identification with amino acid-coded mass tagging.
    Shui W, Liu Y, Fan H, Bao H, Liang S, Yang P, Chen X.
    J Proteome Res; 2005 Sep 07; 4(1):83-90. PubMed ID: 15707361
    [Abstract] [Full Text] [Related]

  • 11. PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry.
    Ma B, Zhang K, Hendrie C, Liang C, Li M, Doherty-Kirby A, Lajoie G.
    Rapid Commun Mass Spectrom; 2003 Sep 07; 17(20):2337-42. PubMed ID: 14558135
    [Abstract] [Full Text] [Related]

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  • 13. Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing.
    Waridel P, Frank A, Thomas H, Surendranath V, Sunyaev S, Pevzner P, Shevchenko A.
    Proteomics; 2007 Jul 07; 7(14):2318-29. PubMed ID: 17623296
    [Abstract] [Full Text] [Related]

  • 14. Protocols for peptidomic analysis of spider venoms.
    Songping L.
    Methods Mol Biol; 2010 Jul 07; 615():75-85. PubMed ID: 20013201
    [Abstract] [Full Text] [Related]

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  • 17. Improved protein identification efficiency by mass spectrometry using N-terminal chemical derivatization of peptides from Angiostrongylus costaricensis, a nematode with unknown genome.
    León IR, Neves-Ferreira AG, Valente RH, Mota EM, Lenzi HL, Perales J.
    J Mass Spectrom; 2007 Jun 07; 42(6):781-92. PubMed ID: 17511016
    [Abstract] [Full Text] [Related]

  • 18. Assessing peptide de novo sequencing algorithms performance on large and diverse data sets.
    Pitzer E, Masselot A, Colinge J.
    Proteomics; 2007 Sep 07; 7(17):3051-4. PubMed ID: 17683051
    [Abstract] [Full Text] [Related]

  • 19. The use of proteotypic peptide libraries for protein identification.
    Craig R, Cortens JP, Beavis RC.
    Rapid Commun Mass Spectrom; 2005 Sep 07; 19(13):1844-50. PubMed ID: 15945033
    [Abstract] [Full Text] [Related]

  • 20. Shotgun protein sequencing by tandem mass spectra assembly.
    Bandeira N, Tang H, Bafna V, Pevzner P.
    Anal Chem; 2004 Dec 15; 76(24):7221-33. PubMed ID: 15595863
    [Abstract] [Full Text] [Related]

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