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444 related items for PubMed ID: 16345003

  • 1. Studies of DNA dumbbells VIII. Melting analysis of DNA dumbbells with dinucleotide repeat stem sequences.
    Mandell KE, Vallone PM, Owczarzy R, Riccelli PV, Benight AS.
    Biopolymers; 2006 Jun 15; 82(3):199-221. PubMed ID: 16345003
    [Abstract] [Full Text] [Related]

  • 2. Studies of DNA dumbbells. II. Construction and characterization of DNA dumbbells with a 16 base-pair duplex stem and Tn end loops (n = 2, 3, 4, 6, 8, 10, 14).
    Amaratunga M, Snowden-Ifft E, Wemmer DE, Benight AS.
    Biopolymers; 1992 Jul 15; 32(7):865-79. PubMed ID: 1391635
    [Abstract] [Full Text] [Related]

  • 3. Studies of DNA dumbbells. V. A DNA triplex formed between a 28 base-pair DNA dumbbell substrate and a 16 base linear single strand.
    Paner TM, Gallo FJ, Doktycz MJ, Benight AS.
    Biopolymers; 1993 Dec 15; 33(12):1779-89. PubMed ID: 8268406
    [Abstract] [Full Text] [Related]

  • 4. Studies of DNA dumbbells. I. Melting curves of 17 DNA dumbbells with different duplex stem sequences linked by T4 endloops: evaluation of the nearest-neighbor stacking interactions in DNA.
    Doktycz MJ, Goldstein RF, Paner TM, Gallo FJ, Benight AS.
    Biopolymers; 1992 Jul 15; 32(7):849-64. PubMed ID: 1391634
    [Abstract] [Full Text] [Related]

  • 5. Studies of DNA dumbbells VII: evaluation of the next-nearest-neighbor sequence-dependent interactions in duplex DNA.
    Owczarzy R, Vallone PM, Goldstein RF, Benight AS.
    Biopolymers; 1999 Jul 15; 52(1):29-56. PubMed ID: 10737861
    [Abstract] [Full Text] [Related]

  • 6. Studies of DNA dumbbells. III. Theoretical analysis of optical melting curves of dumbbells with a 16 base-pair duplex stem and Tn end loops (n = 2, 3, 4, 6, 8, 10, 14).
    Paner TM, Amaratunga M, Benight AS.
    Biopolymers; 1992 Jul 15; 32(7):881-92. PubMed ID: 1391636
    [Abstract] [Full Text] [Related]

  • 7. Studies of DNA dumbbells. IV. Preparation and melting of a DNA dumbbell with the 16 base-pair sequence 5'G-T-A-T-C-C-C-T-C-T-G-G-A-T-A-C3' linked on the ends by dodecyl chains.
    Doktycz MJ, Paner TM, Benight AS.
    Biopolymers; 1993 Dec 15; 33(12):1765-77. PubMed ID: 8268405
    [Abstract] [Full Text] [Related]

  • 8. Thermodynamic, spectroscopic, and equilibrium binding studies of DNA sequence context effects in six 22-base pair deoxyoligonucleotides.
    Riccelli PV, Vallone PM, Kashin I, Faldasz BD, Lane MJ, Benight AS.
    Biochemistry; 1999 Aug 24; 38(34):11197-208. PubMed ID: 10460177
    [Abstract] [Full Text] [Related]

  • 9. Sequence dependence of the free energy of B-Z junction formation in deoxyoligonucleotides.
    Sheardy RD, Suh D, Kurzinsky R, Doktycz MJ, Benight AS, Chaires JB.
    J Mol Biol; 1993 May 20; 231(2):475-88. PubMed ID: 8510158
    [Abstract] [Full Text] [Related]

  • 10. Studies of DNA dumbbells. VI. Analysis of optical melting curves of dumbbells with a sixteen-base pair duplex stem and end-loops of variable size and sequence.
    Paner TM, Riccelli PV, Owczarzy R, Benight AS.
    Biopolymers; 1996 Dec 20; 39(6):779-93. PubMed ID: 8946800
    [Abstract] [Full Text] [Related]

  • 11. Melting studies of short DNA hairpins: influence of loop sequence and adjoining base pair identity on hairpin thermodynamic stability.
    Vallone PM, Paner TM, Hilario J, Lane MJ, Faldasz BD, Benight AS.
    Biopolymers; 1999 Oct 05; 50(4):425-42. PubMed ID: 10423551
    [Abstract] [Full Text] [Related]

  • 12. Structures and stabilities of small DNA dumbbells with Watson-Crick and Hoogsteen base pairs.
    Escaja N, Gómez-Pinto I, Rico M, Pedroso E, González C.
    Chembiochem; 2003 Jul 07; 4(7):623-32. PubMed ID: 12851932
    [Abstract] [Full Text] [Related]

  • 13. Influence of sequence context and length on the structure and stability of triplet repeat DNA oligomers.
    Paiva AM, Sheardy RD.
    Biochemistry; 2004 Nov 09; 43(44):14218-27. PubMed ID: 15518572
    [Abstract] [Full Text] [Related]

  • 14. Stability of DNA duplexes containing GG, CC, AA, and TT mismatches.
    Tikhomirova A, Beletskaya IV, Chalikian TV.
    Biochemistry; 2006 Sep 05; 45(35):10563-71. PubMed ID: 16939208
    [Abstract] [Full Text] [Related]

  • 15. Thermodynamic stability of the 5' dangling-ended DNA hairpins formed from sequences 5'-(XY)2GGATAC(T)4GTATCC-3', where X, Y = A, T, G, C.
    Doktycz MJ, Paner TM, Amaratunga M, Benight AS.
    Biopolymers; 1990 Sep 05; 30(7-8):829-45. PubMed ID: 2275982
    [Abstract] [Full Text] [Related]

  • 16. Long-range structural effects in supercoiled DNA: statistical thermodynamics reveals a correlation between calculated cooperative melting and contextual influence on cruciform extrusion.
    Schaeffer F, Yeramian E, Lilley DM.
    Biopolymers; 1989 Aug 05; 28(8):1449-73. PubMed ID: 2752100
    [Abstract] [Full Text] [Related]

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  • 19. Hybrid oligomer duplexes formed with phosphorothioate DNAs: CD spectra and melting temperatures of S-DNA.RNA hybrids are sequence-dependent but consistent with similar heteronomous conformations.
    Hashem GM, Pham L, Vaughan MR, Gray DM.
    Biochemistry; 1998 Jan 06; 37(1):61-72. PubMed ID: 9425026
    [Abstract] [Full Text] [Related]

  • 20. Counterion association with native and denatured nucleic acids: an experimental approach.
    Völker J, Klump HH, Manning GS, Breslauer KJ.
    J Mol Biol; 2001 Jul 27; 310(5):1011-25. PubMed ID: 11501992
    [Abstract] [Full Text] [Related]

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