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Journal Abstract Search

294 related items for PubMed ID: 16368108

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  • 3. Ab initio prediction of peptide-MHC binding geometry for diverse class I MHC allotypes.
    Bordner AJ, Abagyan R.
    Proteins; 2006 May 15; 63(3):512-26. PubMed ID: 16470819
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  • 4. Changes at the floor of the peptide-binding groove induce a strong preference for proline at position 3 of the bound peptide: molecular dynamics simulations of HLA-A*0217.
    Toh H, Savoie CJ, Kamikawaji N, Muta S, Sasazuki T, Kuhara S.
    Biopolymers; 2000 Oct 15; 54(5):318-27. PubMed ID: 10935972
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  • 6. MHC class I/peptide interactions: binding specificity and kinetics.
    Margulies DH, Corr M, Boyd LF, Khilko SN.
    J Mol Recognit; 1993 Jun 15; 6(2):59-69. PubMed ID: 8305252
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  • 11. POPI: predicting immunogenicity of MHC class I binding peptides by mining informative physicochemical properties.
    Tung CW, Ho SY.
    Bioinformatics; 2007 Apr 15; 23(8):942-9. PubMed ID: 17384427
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  • 14. Flexibility of the MHC class II peptide binding cleft in the bound, partially filled, and empty states: a molecular dynamics simulation study.
    Yaneva R, Springer S, Zacharias M.
    Biopolymers; 2009 Jan 15; 91(1):14-27. PubMed ID: 18767126
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  • 18. Differential tapasin dependence of MHC class I molecules correlates with conformational changes upon peptide dissociation: a molecular dynamics simulation study.
    Sieker F, Straatsma TP, Springer S, Zacharias M.
    Mol Immunol; 2008 Aug 15; 45(14):3714-22. PubMed ID: 18639935
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  • 20. Prediction of protein loop conformations using multiscale modeling methods with physical energy scoring functions.
    Olson MA, Feig M, Brooks CL.
    J Comput Chem; 2008 Apr 15; 29(5):820-31. PubMed ID: 17876760
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