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Journal Abstract Search

314 related items for PubMed ID: 16376106

  • 1. Molecular insight into pseudolysin inhibition using the MM-PBSA and LIE methods.
    Adekoya OA, Willassen NP, Sylte I.
    J Struct Biol; 2006 Feb; 153(2):129-44. PubMed ID: 16376106
    [Abstract] [Full Text] [Related]

  • 2. The protein-protein interactions between SMPI and thermolysin studied by molecular dynamics and MM/PBSA calculations.
    Adekoya O, Willassen NP, Sylte I.
    J Biomol Struct Dyn; 2005 Apr; 22(5):521-31. PubMed ID: 15702924
    [Abstract] [Full Text] [Related]

  • 3. Binding free energies and free energy components from molecular dynamics and Poisson-Boltzmann calculations. Application to amino acid recognition by aspartyl-tRNA synthetase.
    Archontis G, Simonson T, Karplus M.
    J Mol Biol; 2001 Feb 16; 306(2):307-27. PubMed ID: 11237602
    [Abstract] [Full Text] [Related]

  • 4. Incorporating receptor flexibility in the molecular design of protein interfaces.
    Li L, Liang S, Pilcher MM, Meroueh SO.
    Protein Eng Des Sel; 2009 Sep 16; 22(9):575-86. PubMed ID: 19643976
    [Abstract] [Full Text] [Related]

  • 5. Molecular modeling of protein A affinity chromatography.
    Salvalaglio M, Zamolo L, Busini V, Moscatelli D, Cavallotti C.
    J Chromatogr A; 2009 Dec 11; 1216(50):8678-86. PubMed ID: 19423117
    [Abstract] [Full Text] [Related]

  • 6. Molecular insight into the interaction between IFABP and PA by using MM-PBSA and alanine scanning methods.
    Zou H, Luo C, Zheng S, Luo X, Zhu W, Chen K, Shen J, Jiang H.
    J Phys Chem B; 2007 Aug 02; 111(30):9104-13. PubMed ID: 17602517
    [Abstract] [Full Text] [Related]

  • 7. Crystallographic structures of the elastase of Pseudomonas aeruginosa.
    McKay DB, Thayer MM, Flaherty KM, Pley H, Benvegnu D.
    Matrix Suppl; 1992 Aug 02; 1():112-5. PubMed ID: 1480011
    [Abstract] [Full Text] [Related]

  • 8. Free energy simulations and MM-PBSA analyses on the affinity and specificity of steroid binding to antiestradiol antibody.
    Laitinen T, Kankare JA, Peräkylä M.
    Proteins; 2004 Apr 01; 55(1):34-43. PubMed ID: 14997538
    [Abstract] [Full Text] [Related]

  • 9. Coordination number of zinc ions in the phosphotriesterase active site by molecular dynamics and quantum mechanics.
    Koca J, Zhan CG, Rittenhouse RC, Ornstein RL.
    J Comput Chem; 2003 Feb 01; 24(3):368-78. PubMed ID: 12548728
    [Abstract] [Full Text] [Related]

  • 10. Molecular dynamics-solvated interaction energy studies of protein-protein interactions: the MP1-p14 scaffolding complex.
    Cui Q, Sulea T, Schrag JD, Munger C, Hung MN, Naïm M, Cygler M, Purisima EO.
    J Mol Biol; 2008 Jun 13; 379(4):787-802. PubMed ID: 18479705
    [Abstract] [Full Text] [Related]

  • 11. Molecular dynamics simulations of the three dimensional model of plasmepsin II-peptidic inhibitor complexes.
    Pranav Kumar SK, Kulkarni VM.
    Drug Des Discov; 2001 Jun 13; 17(4):293-313. PubMed ID: 11765133
    [Abstract] [Full Text] [Related]

  • 12. Insights into activation and RNA binding of trp RNA-binding attenuation protein (TRAP) through all-atom simulations.
    Murtola T, Vattulainen I, Falck E.
    Proteins; 2008 Jun 13; 71(4):1995-2011. PubMed ID: 18186477
    [Abstract] [Full Text] [Related]

  • 13. Energetics of sequence-specific protein-DNA association: computational analysis of integrase Tn916 binding to its target DNA.
    Gorfe AA, Jelesarov I.
    Biochemistry; 2003 Oct 14; 42(40):11568-76. PubMed ID: 14529266
    [Abstract] [Full Text] [Related]

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  • 16. Grand canonical Monte Carlo simulation of ligand-protein binding.
    Clark M, Guarnieri F, Shkurko I, Wiseman J.
    J Chem Inf Model; 2006 Oct 14; 46(1):231-42. PubMed ID: 16426059
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