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Journal Abstract Search

199 related items for PubMed ID: 16377205

  • 1. Assessing methods for identifying pair-wise atomic contacts across binding interfaces.
    Fischer TB, Holmes JB, Miller IR, Parsons JR, Tung L, Hu JC, Tsai J.
    J Struct Biol; 2006 Feb; 153(2):103-12. PubMed ID: 16377205
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  • 2. [Geometrical analysis of protein-DNA interactions on the basis of the Voronoĭ-Delaune tessellation].
    Anashkina AA, Tumanian VG, Kuznetsov EN, Galkin AV, Esipova NG.
    Biofizika; 2008 Feb; 53(3):402-6. PubMed ID: 18634311
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  • 5. Voronoi and Voronoi-related tessellations in studies of protein structure and interaction.
    Poupon A.
    Curr Opin Struct Biol; 2004 Apr; 14(2):233-41. PubMed ID: 15093839
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  • 8. Shelling the Voronoi interface of protein-protein complexes reveals patterns of residue conservation, dynamics, and composition.
    Bouvier B, Grünberg R, Nilges M, Cazals F.
    Proteins; 2009 Aug 15; 76(3):677-92. PubMed ID: 19280599
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  • 9. DiMoVo: a Voronoi tessellation-based method for discriminating crystallographic and biological protein-protein interactions.
    Bernauer J, Bahadur RP, Rodier F, Janin J, Poupon A.
    Bioinformatics; 2008 Mar 01; 24(5):652-8. PubMed ID: 18204058
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  • 10. Three-dimensional computation of atom depth in complex molecular structures.
    Varrazzo D, Bernini A, Spiga O, Ciutti A, Chiellini S, Venditti V, Bracci L, Niccolai N.
    Bioinformatics; 2005 Jun 15; 21(12):2856-60. PubMed ID: 15827080
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  • 11. [The relationship between protein accessible surface area and number of native contacts in its structure].
    Bogatyreva NS, Ivankov DN.
    Mol Biol (Mosk); 2008 Jun 15; 42(6):1048-55. PubMed ID: 19140326
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  • 15. Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy.
    Tuncbag N, Gursoy A, Keskin O.
    Bioinformatics; 2009 Jun 15; 25(12):1513-20. PubMed ID: 19357097
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  • 17. FURSMASA: a new approach to rapid scoring functions that uses a MD-averaged potential energy grid and a solvent-accessible surface area term with parameters GA fit to experimental data.
    Pearlman DA, Rao BG, Charifson P.
    Proteins; 2008 May 15; 71(3):1519-38. PubMed ID: 18300249
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  • 18. A dissection of the protein-protein interfaces in icosahedral virus capsids.
    Bahadur RP, Rodier F, Janin J.
    J Mol Biol; 2007 Mar 23; 367(2):574-90. PubMed ID: 17270209
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