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Journal Abstract Search

199 related items for PubMed ID: 16377205

  • 21. Quantification of protein surfaces, volumes and atom-atom contacts using a constrained Voronoi procedure.
    McConkey BJ, Sobolev V, Edelman M.
    Bioinformatics; 2002 Oct; 18(10):1365-73. PubMed ID: 12376381
    [Abstract] [Full Text] [Related]

  • 22. SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces.
    Teyra J, Doms A, Schroeder M, Pisabarro MT.
    BMC Bioinformatics; 2006 Mar 02; 7():104. PubMed ID: 16512892
    [Abstract] [Full Text] [Related]

  • 23. Computational analysis of RNA-protein interaction interfaces via the Voronoi diagram.
    Mahdavi S, Mohades A, Salehzadeh Yazdi A, Jahandideh S, Masoudi-Nejad A.
    J Theor Biol; 2012 Jan 21; 293():55-64. PubMed ID: 22004995
    [Abstract] [Full Text] [Related]

  • 24. Evaluation of the protein solvent-accessible surface using reduced representations in terms of critical points of the electron density.
    Becue A, Meurice N, Leherte L, Vercauteren DP.
    J Comput Chem; 2004 Jul 15; 25(9):1117-26. PubMed ID: 15116355
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  • 25. Effective atom volumes for implicit solvent models: comparison between Voronoi volumes and minimum fluctuation volumes.
    Schaefer M, Bartels C, Leclerc F, Karplus M.
    J Comput Chem; 2001 Nov 30; 22(15):1857-1879. PubMed ID: 12116417
    [Abstract] [Full Text] [Related]

  • 26. An all-atom, distance-dependent scoring function for the prediction of protein-DNA interactions from structure.
    Robertson TA, Varani G.
    Proteins; 2007 Feb 01; 66(2):359-74. PubMed ID: 17078093
    [Abstract] [Full Text] [Related]

  • 27. Protein contacts, inter-residue interactions and side-chain modelling.
    Faure G, Bornot A, de Brevern AG.
    Biochimie; 2008 Apr 01; 90(4):626-39. PubMed ID: 18086572
    [Abstract] [Full Text] [Related]

  • 28. Global and local Voronoi analysis of solvation shells of proteins.
    Neumayr G, Rudas T, Steinhauser O.
    J Chem Phys; 2010 Aug 28; 133(8):084108. PubMed ID: 20815561
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  • 29. Characterization of interfacial solvent in protein complexes and contribution of wet spots to the interface description.
    Teyra J, Pisabarro MT.
    Proteins; 2007 Jun 01; 67(4):1087-95. PubMed ID: 17397062
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  • 30. Comparative analysis of threshold and tessellation methods for determining protein contacts.
    Esque J, Oguey C, de Brevern AG.
    J Chem Inf Model; 2011 Feb 28; 51(2):493-507. PubMed ID: 21226523
    [Abstract] [Full Text] [Related]

  • 31. Taking advantage of local structure descriptors to analyze interresidue contacts in protein structures and protein complexes.
    Martin J, Regad L, Etchebest C, Camproux AC.
    Proteins; 2008 Nov 15; 73(3):672-89. PubMed ID: 18491388
    [Abstract] [Full Text] [Related]

  • 32. Information theory-based scoring function for the structure-based prediction of protein-ligand binding affinity.
    Kulharia M, Goody RS, Jackson RM.
    J Chem Inf Model; 2008 Oct 15; 48(10):1990-8. PubMed ID: 18767831
    [Abstract] [Full Text] [Related]

  • 33. A molecular dynamics approach to study the importance of solvent in protein interactions.
    Samsonov S, Teyra J, Pisabarro MT.
    Proteins; 2008 Nov 01; 73(2):515-25. PubMed ID: 18452208
    [Abstract] [Full Text] [Related]

  • 34. Empirical solvent-mediated potentials hold for both intra-molecular and inter-molecular inter-residue interactions.
    Keskin O, Bahar I, Badretdinov AY, Ptitsyn OB, Jernigan RL.
    Protein Sci; 1998 Dec 01; 7(12):2578-86. PubMed ID: 9865952
    [Abstract] [Full Text] [Related]

  • 35. Atomic contact vectors in protein-protein recognition.
    Mintseris J, Weng Z.
    Proteins; 2003 Nov 15; 53(3):629-39. PubMed ID: 14579354
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  • 36. Molecular principles of the interactions of disordered proteins.
    Mészáros B, Tompa P, Simon I, Dosztányi Z.
    J Mol Biol; 2007 Sep 14; 372(2):549-61. PubMed ID: 17681540
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  • 37. Protein cutoff scanning: A comparative analysis of cutoff dependent and cutoff free methods for prospecting contacts in proteins.
    da Silveira CH, Pires DE, Minardi RC, Ribeiro C, Veloso CJ, Lopes JC, Meira W, Neshich G, Ramos CH, Habesch R, Santoro MM.
    Proteins; 2009 Feb 15; 74(3):727-43. PubMed ID: 18704933
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  • 38. An analytical method for computing atomic contact areas in biomolecules.
    Mach P, Koehl P.
    J Comput Chem; 2013 Jan 15; 34(2):105-20. PubMed ID: 22965816
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  • 39. PPIDD: an extraction and visualisation method of biological protein-protein interfaces.
    Benoit V, Mucchielli-Giorgi MH, Dumont B, Durosay P, Reymond N, Delacroix H.
    Biochimie; 2008 Apr 15; 90(4):640-7. PubMed ID: 18086573
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  • 40. Integrated search and alignment of protein structures.
    Sacan A, Toroslu IH, Ferhatosmanoglu H.
    Bioinformatics; 2008 Dec 15; 24(24):2872-9. PubMed ID: 18945684
    [Abstract] [Full Text] [Related]

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