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Journal Abstract Search

244 related items for PubMed ID: 16381984

  • 1. MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data.
    Sun H, Palaniswamy SK, Pohar TT, Jin VX, Huang TH, Davuluri RV.
    Nucleic Acids Res; 2006 Jan 01; 34(Database issue):D98-103. PubMed ID: 16381984
    [Abstract] [Full Text] [Related]

  • 2. MPromDb update 2010: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-seq experimental data.
    Gupta R, Bhattacharyya A, Agosto-Perez FJ, Wickramasinghe P, Davuluri RV.
    Nucleic Acids Res; 2011 Jan 01; 39(Database issue):D92-7. PubMed ID: 21097880
    [Abstract] [Full Text] [Related]

  • 3. TRED: a transcriptional regulatory element database, new entries and other development.
    Jiang C, Xuan Z, Zhao F, Zhang MQ.
    Nucleic Acids Res; 2007 Jan 01; 35(Database issue):D137-40. PubMed ID: 17202159
    [Abstract] [Full Text] [Related]

  • 4. Bioinformatics tools for modeling transcription factor target genes and epigenetic changes.
    Davuluri RV.
    Methods Mol Biol; 2007 Jan 01; 408():129-51. PubMed ID: 18314581
    [Abstract] [Full Text] [Related]

  • 5. CEAS: cis-regulatory element annotation system.
    Ji X, Li W, Song J, Wei L, Liu XS.
    Nucleic Acids Res; 2006 Jul 01; 34(Web Server issue):W551-4. PubMed ID: 16845068
    [Abstract] [Full Text] [Related]

  • 6. A computational genomics approach to identify cis-regulatory modules from chromatin immunoprecipitation microarray data--a case study using E2F1.
    Jin VX, Rabinovich A, Squazzo SL, Green R, Farnham PJ.
    Genome Res; 2006 Dec 01; 16(12):1585-95. PubMed ID: 17053090
    [Abstract] [Full Text] [Related]

  • 7. AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    Davuluri RV, Sun H, Palaniswamy SK, Matthews N, Molina C, Kurtz M, Grotewold E.
    BMC Bioinformatics; 2003 Jun 23; 4():25. PubMed ID: 12820902
    [Abstract] [Full Text] [Related]

  • 8. TRED: a Transcriptional Regulatory Element Database and a platform for in silico gene regulation studies.
    Zhao F, Xuan Z, Liu L, Zhang MQ.
    Nucleic Acids Res; 2005 Jan 01; 33(Database issue):D103-7. PubMed ID: 15608156
    [Abstract] [Full Text] [Related]

  • 9. CoCo: a web application to display, store and curate ChIP-on-chip data integrated with diverse types of gene expression data.
    Girardot C, Sklyar O, Grosz S, Huber W, Furlong EE.
    Bioinformatics; 2007 Mar 15; 23(6):771-3. PubMed ID: 17234641
    [Abstract] [Full Text] [Related]

  • 10. ABS: a database of Annotated regulatory Binding Sites from orthologous promoters.
    Blanco E, Farré D, Albà MM, Messeguer X, Guigó R.
    Nucleic Acids Res; 2006 Jan 01; 34(Database issue):D63-7. PubMed ID: 16381947
    [Abstract] [Full Text] [Related]

  • 11. HemoPDB: Hematopoiesis Promoter Database, an information resource of transcriptional regulation in blood cell development.
    Pohar TT, Sun H, Davuluri RV.
    Nucleic Acids Res; 2004 Jan 01; 32(Database issue):D86-90. PubMed ID: 14681365
    [Abstract] [Full Text] [Related]

  • 12. Integration of cap analysis of gene expression and chromatin immunoprecipitation analysis on array reveals genome-wide androgen receptor signaling in prostate cancer cells.
    Takayama K, Tsutsumi S, Katayama S, Okayama T, Horie-Inoue K, Ikeda K, Urano T, Kawazu C, Hasegawa A, Ikeo K, Gojyobori T, Ouchi Y, Hayashizaki Y, Aburatani H, Inoue S.
    Oncogene; 2011 Feb 03; 30(5):619-30. PubMed ID: 20890304
    [Abstract] [Full Text] [Related]

  • 13. Analysis of transcriptional regulation of the small leucine rich proteoglycans.
    Tasheva ES, Klocke B, Conrad GW.
    Mol Vis; 2004 Oct 07; 10():758-72. PubMed ID: 15496828
    [Abstract] [Full Text] [Related]

  • 14. Positional distribution of human transcription factor binding sites.
    Koudritsky M, Domany E.
    Nucleic Acids Res; 2008 Dec 07; 36(21):6795-805. PubMed ID: 18953043
    [Abstract] [Full Text] [Related]

  • 15. A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences.
    Li W, Meyer CA, Liu XS.
    Bioinformatics; 2005 Jun 07; 21 Suppl 1():i274-82. PubMed ID: 15961467
    [Abstract] [Full Text] [Related]

  • 16. MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes.
    Marinescu VD, Kohane IS, Riva A.
    BMC Bioinformatics; 2005 Mar 30; 6():79. PubMed ID: 15799782
    [Abstract] [Full Text] [Related]

  • 17. CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis.
    Kawaji H, Kasukawa T, Fukuda S, Katayama S, Kai C, Kawai J, Carninci P, Hayashizaki Y.
    Nucleic Acids Res; 2006 Jan 01; 34(Database issue):D632-6. PubMed ID: 16381948
    [Abstract] [Full Text] [Related]

  • 18. KBERG: KnowledgeBase for Estrogen Responsive Genes.
    Tang S, Zhang Z, Tan SL, Tang MH, Kumar AP, Ramadoss SK, Bajic VB.
    Nucleic Acids Res; 2007 Jan 01; 35(Database issue):D732-6. PubMed ID: 17090589
    [Abstract] [Full Text] [Related]

  • 19. The MAPPER database: a multi-genome catalog of putative transcription factor binding sites.
    Marinescu VD, Kohane IS, Riva A.
    Nucleic Acids Res; 2005 Jan 01; 33(Database issue):D91-7. PubMed ID: 15608292
    [Abstract] [Full Text] [Related]

  • 20. An integrated software system for analyzing ChIP-chip and ChIP-seq data.
    Ji H, Jiang H, Ma W, Johnson DS, Myers RM, Wong WH.
    Nat Biotechnol; 2008 Nov 01; 26(11):1293-300. PubMed ID: 18978777
    [Abstract] [Full Text] [Related]

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