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Journal Abstract Search

424 related items for PubMed ID: 16397892

  • 1. A correlation-based method for the enhancement of scoring functions on funnel-shaped energy landscapes.
    Stumpff-Kane AW, Feig M.
    Proteins; 2006 Apr 01; 63(1):155-64. PubMed ID: 16397892
    [Abstract] [Full Text] [Related]

  • 2. Folding with downhill behavior and low cooperativity of proteins.
    Zuo G, Wang J, Wang W.
    Proteins; 2006 Apr 01; 63(1):165-73. PubMed ID: 16416404
    [Abstract] [Full Text] [Related]

  • 3. Protein conformational transitions coupled to binding in molecular recognition of unstructured proteins: deciphering the effect of intermolecular interactions on computational structure prediction of the p27Kip1 protein bound to the cyclin A-cyclin-dependent kinase 2 complex.
    Verkhivker GM.
    Proteins; 2005 Feb 15; 58(3):706-16. PubMed ID: 15609350
    [Abstract] [Full Text] [Related]

  • 4. Modeling side-chains using molecular dynamics improve recognition of binding region in CAPRI targets.
    Camacho CJ.
    Proteins; 2005 Aug 01; 60(2):245-51. PubMed ID: 15981253
    [Abstract] [Full Text] [Related]

  • 5. Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility.
    Schueler-Furman O, Wang C, Baker D.
    Proteins; 2005 Aug 01; 60(2):187-94. PubMed ID: 15981249
    [Abstract] [Full Text] [Related]

  • 6. A general approach for developing system-specific functions to score protein-ligand docked complexes using support vector inductive logic programming.
    Amini A, Shrimpton PJ, Muggleton SH, Sternberg MJ.
    Proteins; 2007 Dec 01; 69(4):823-31. PubMed ID: 17910057
    [Abstract] [Full Text] [Related]

  • 7. A filter enhanced sampling and combinatorial scoring study for protein docking in CAPRI.
    Gong XQ, Chang S, Zhang QH, Li CH, Shen LZ, Ma XH, Wang MH, Liu B, He HQ, Chen WZ, Wang CX.
    Proteins; 2007 Dec 01; 69(4):859-65. PubMed ID: 17803223
    [Abstract] [Full Text] [Related]

  • 8. Docking prediction using biological information, ZDOCK sampling technique, and clustering guided by the DFIRE statistical energy function.
    Zhang C, Liu S, Zhou Y.
    Proteins; 2005 Aug 01; 60(2):314-8. PubMed ID: 15981255
    [Abstract] [Full Text] [Related]

  • 9. Assessing the energy landscape of CAPRI targets by FunHunt.
    London N, Schueler-Furman O.
    Proteins; 2007 Dec 01; 69(4):809-15. PubMed ID: 17803233
    [Abstract] [Full Text] [Related]

  • 10. Prediction and scoring of docking poses with pyDock.
    Grosdidier S, Pons C, Solernou A, Fernández-Recio J.
    Proteins; 2007 Dec 01; 69(4):852-8. PubMed ID: 17876821
    [Abstract] [Full Text] [Related]

  • 11. Improving CAPRI predictions: optimized desolvation for rigid-body docking.
    Fernández-Recio J, Abagyan R, Totrov M.
    Proteins; 2005 Aug 01; 60(2):308-13. PubMed ID: 15981266
    [Abstract] [Full Text] [Related]

  • 12. Scoring docking models with evolutionary information.
    Tress M, de Juan D, Graña O, Gómez MJ, Gómez-Puertas P, González JM, López G, Valencia A.
    Proteins; 2005 Aug 01; 60(2):275-80. PubMed ID: 15981273
    [Abstract] [Full Text] [Related]

  • 13. Entropy capacity determines protein folding.
    Galzitskaya OV, Garbuzynskiy SO.
    Proteins; 2006 Apr 01; 63(1):144-54. PubMed ID: 16400647
    [Abstract] [Full Text] [Related]

  • 14. Biologically enhanced sampling geometric docking and backbone flexibility treatment with multiconformational superposition.
    Ma XH, Li CH, Shen LZ, Gong XQ, Chen WZ, Wang CX.
    Proteins; 2005 Aug 01; 60(2):319-23. PubMed ID: 15981260
    [Abstract] [Full Text] [Related]

  • 15. Implicit flexibility in protein docking: cross-docking and local refinement.
    Król M, Chaleil RA, Tournier AL, Bates PA.
    Proteins; 2007 Dec 01; 69(4):750-7. PubMed ID: 17671977
    [Abstract] [Full Text] [Related]

  • 16. ClusPro: performance in CAPRI rounds 6-11 and the new server.
    Comeau SR, Kozakov D, Brenke R, Shen Y, Beglov D, Vajda S.
    Proteins; 2007 Dec 01; 69(4):781-5. PubMed ID: 17876812
    [Abstract] [Full Text] [Related]

  • 17. Protein-protein docking in CAPRI using ATTRACT to account for global and local flexibility.
    May A, Zacharias M.
    Proteins; 2007 Dec 01; 69(4):774-80. PubMed ID: 17803217
    [Abstract] [Full Text] [Related]

  • 18. Exploring the charge space of protein-protein association: a proteomic study.
    Shaul Y, Schreiber G.
    Proteins; 2005 Aug 15; 60(3):341-52. PubMed ID: 15887221
    [Abstract] [Full Text] [Related]

  • 19. Docking and scoring protein complexes: CAPRI 3rd Edition.
    Lensink MF, Méndez R, Wodak SJ.
    Proteins; 2007 Dec 01; 69(4):704-18. PubMed ID: 17918726
    [Abstract] [Full Text] [Related]

  • 20. Docking essential dynamics eigenstructures.
    Mustard D, Ritchie DW.
    Proteins; 2005 Aug 01; 60(2):269-74. PubMed ID: 15981272
    [Abstract] [Full Text] [Related]

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